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PPD_00BCRPV.1

South_Africa/PPD_00BCRPV.1/2025-09-25
J. Maritz, D. Goedhals, J. Pekeur, T. Maponga, M. Claassen, T. Stander, G. van Zyl, W. Preiser, L. M. Hofstra, L. Chabuka, K. W. Liedeman, S. De Villiers, V. Wentzel, L. Singh, T. Ramakutoane, H. Tegally, E. Wilkinson & T. de Oliveira

S, Cape Town, Western Cape

Sample details

Collection date
2025-09-25
Sampling location
South Africa (Western Cape; Cape Town; Cape Town)
Isolate name
hMPV/A/SouthAfrica/PATH-CERI-C070371/2025

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-01 06:36insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A2.2.2

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-02-28
NCBI update date
2026-03-01

Host

Host

Submission details

Submission ID
OZ414742.1
Submitting group
Date submitted
2026-03-01 06:36:33 UTC
Date released
2026-03-01 06:45:58 UTC
Earliest release date
2026-02-28

Alignment and QC

Length
13177 (96.3%)
# of SNPs
1016
# of inserted bases
112
# of deleted bases
57
# of unknown bases
271
# of frame shifts
1
# of stop codons
1
Frame shifts
G:228-237(nt:6927-6957)
Stop Codons
G:220

Nucleotide mutations

Mutations called relative to the NC_039199.1 reference

Substitutions

  • A51G
  • T70C
  • A117G
  • G126A
  • T129C
  • T138A
  • G180A
  • G195A
  • A204G
  • G208A
  • C213T
  • T249C
  • T259C
  • A264G
  • T265A
  • G276A
  • T285C
  • G288A
Deletions

4692-4719, 6224, 6907-6926, 7024-7031
Insertions

ins_6705:TCAAGCACAGTCTCCAAAACACAACTCCCATCACGGGCAACAACGAAGGCGGCCTCCAGAGCCACCACCCTCAGAATAAAAACAAAATCGACAGCCCACAGAAGAAACATC, ins_7133:T

Amino acid mutations

Mutations called relative to the NC_039199.1 reference

Substitutions

F

  • F:R82K
  • F:P98L
  • F:A185D
  • F:F258I
  • F:G294E
  • F:S466N
  • F:T504S
  • F:V510I
  • F:K518R
  • F:N539S

G

  • G:T10A
  • G:K29R
  • G:V34I
  • G:T40A
  • G:L41M
  • G:I43V
  • G:K54T
  • G:M55I
  • G:N58T
  • G:T59A
  • G:E61K
  • G:S69P
  • G:M71T
  • G:S74N
  • G:R75K
  • G:P78S
  • G:V80I
  • G:T82I

L

  • L:I75V
  • L:T95K
  • L:S132G
  • L:K162R
  • L:V182I
  • L:I245M
  • L:W390L
  • L:K496T
  • L:T505A
  • L:K530R
  • L:S534N
  • L:K538R
  • L:D546E
  • L:G760D
  • L:S769R
  • L:S895T
  • L:R951K
  • L:A954T

M

  • M:I23V
  • M:N66S
  • M:K87R

M2-1

  • M2-1:V130I
  • M2-1:E170D

M2-2

  • M2-2:H35Q
  • M2-2:D37E

N

  • N:A57T
  • N:S76T
  • N:V92A
  • N:I103V
  • N:H220Y

P

  • P:G31S
  • P:N44S
  • P:A59T
  • P:T78I
  • P:K79R
  • P:I82A
  • P:A85T
  • P:V88I
  • P:V214I
  • P:K227R
  • P:S239N
  • P:S242T
  • P:T280L
  • P:S284N

SH

  • SH:S9N
  • SH:V33A
  • SH:L44F
  • SH:S68P
  • SH:K71E
  • SH:S74P
  • SH:N87D
  • SH:S96R
  • SH:N103D
  • SH:A105V
  • SH:S108K
  • SH:N115S
  • SH:S132P
  • SH:T135S
  • SH:T137I
  • SH:N139S
  • SH:K142R
  • SH:P151S
Deletions

G

G:221-227
Insertions

G

ins_G:153:SSTVSKTQLPSRATTKAASRATTLRIKTKSTAHRRNI

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