This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_00BBC79.1

Display Name: South_Africa/PPD_00BBC79.1/2025-10-01
J. Maritz, D. Goedhals, J. Pekeur, T. Maponga, M. Claassen, T. Stander, G. van Zyl, W. Preiser, L. M. Hofstra, L. Chabuka, K. W. Liedeman, S. De Villiers, V. Wentzel, L. Singh, T. Ramakutoane, H. Tegally, E. Wilkinson & T. de Oliveira

Sample details

Collection date
2025-10-01
Country
South Africa
Admin level 1
Western Cape; Cape Town; Cape Town
Isolate name
hMPV/B/SouthAfrica/PATH-CERI-C070897/2025

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-21 06:26insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B2

Authors

Author affiliations
S, Cape Town, Western Cape

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-02-17
NCBI update date
2026-02-18

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
13151
Completeness
88.66%
# of SNPs
1942
# of inserted bases
3
# of deleted bases
40
# of ambiguous bases
0
# of unknown bases
1352
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
OZ412854.1
Submitting group
Date submitted
2026-02-21 06:26:09 UTC
Date released
2026-02-21 06:35:28 UTC
Earliest release date
2026-02-17

Nucleotide mutations

Mutations called relative to the NC_039199.1 reference

Substitutions

  • G11A
  • A20C
  • T24A
  • A25C
  • T26G
  • G29A
  • A30C
  • C31A
  • G34T
  • T35A
  • G36A
  • G63A
  • T70C
  • A72G
  • C78T
  • G81A
  • G99A
  • G105A
    • Deletions
    3006, 4684-4722
    Insertions
    ins_5813:AGA

    Amino acid mutations

    Mutations called relative to the NC_039199.1 reference

    Substitutions

    F

  • F:V6M
  • F:F9I
  • F:A61T
  • F:R82K
  • F:V122I
  • F:T135N
  • F:N139G
  • F:K143T
  • F:D167E
  • F:R175S
  • F:T223N
  • F:N233Y
  • F:F258I
  • F:D280N
  • F:V286I
  • F:G294E
  • F:K296D
  • F:Q312K

    • G

  • G:K4R
  • G:T10A
  • G:L14F
  • G:R17K
  • G:V18M
  • G:V22I
  • G:A23R
  • G:R24N
  • G:F28Y
  • G:K29R
  • G:S32T
  • G:V34I
  • G:I38L
  • G:T40A
  • G:I43M
  • G:Y48F
  • G:N52D
  • G:K54A

    • L

  • L:L4F
  • L:N5C
  • L:N42K
  • L:A46S
  • L:S123T
  • L:D127N
  • L:S132N
  • L:S141V
  • L:K162R
  • L:V182I
  • L:I189V
  • L:V198I
  • L:S228N
  • L:E231K
  • L:L238F
  • L:I245M
  • L:C262S
  • L:R282K

    • M

  • M:I23V
  • M:E103D
  • M:E111D
  • M:T156I
  • M:K237R
  • M:T241S

    • M2-1

  • M2-1:I37L
  • M2-1:R52K
  • M2-1:S88G
  • M2-1:V108I
  • M2-1:V130I
  • M2-1:R149K
  • M2-1:K160R
  • M2-1:A169T
  • M2-1:E170D

    • M2-2

  • M2-2:E18K
  • M2-2:V22K
  • M2-2:V28A
  • M2-2:D37E
  • M2-2:A41T
  • M2-2:N55S
  • M2-2:C56Y

    • N

  • N:A54T
  • N:A57T
  • N:S71C
  • N:R96K
  • N:I103G
  • N:N106S
  • N:D110E
  • N:A136V
  • N:M201V
  • N:D212E
  • N:H220Y
  • N:K356R
  • N:V385M
  • N:S389N
  • N:N391D

    • P

  • P:L19I
  • P:R28K
  • P:K29R
  • P:P30S
  • P:S35T
  • P:I39V
  • P:N44T
  • P:V46I
  • P:K60R
  • P:P61S
  • P:T62S
  • P:I63T
  • P:S65L
  • P:T72A
  • P:K74S
  • P:G75S
  • P:E81T
  • P:I82E

    • SH

  • SH:T17N
  • SH:H18Q
  • SH:D25N
  • SH:V30L
  • SH:V33A
  • SH:L44F
  • SH:I50V
  • SH:I61A
  • SH:S64L
  • SH:T66N
  • SH:S73T
  • SH:S74K
  • SH:S75L
  • SH:V80T
  • SH:T82I
  • SH:T84P
  • SH:T85I
  • SH:L86P
    • Deletions
    None
    Insertions
    ins_SH:108:R

    Report an issue with this sequence or metadata

    Create GitHub issue