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PPD_00BBC4F.1

Display Name: South_Africa/PPD_00BBC4F.1/2025-10-06
J. Maritz, D. Goedhals, J. Pekeur, T. Maponga, M. Claassen, T. Stander, G. van Zyl, W. Preiser, L. M. Hofstra, L. Chabuka, K. W. Liedeman, S. De Villiers, V. Wentzel, L. Singh, T. Ramakutoane, H. Tegally, E. Wilkinson & T. de Oliveira

Sample details

Collection date
2025-10-06
Country
South Africa
Admin level 1
Western Cape; Cape Town; Cape Town
Isolate name
hMPV/B/SouthAfrica/PATH-CERI-C071101/2025

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-21 06:26insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B2

Authors

Author affiliations
S, Cape Town, Western Cape

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-02-17
NCBI update date
2026-02-18

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
12669
Completeness
85.03%
# of SNPs
2053
# of inserted bases
26
# of deleted bases
63
# of ambiguous bases
0
# of unknown bases
1354
# of frame shifts
1
# of stop codons
1
Frame shifts
G:207-227(nt:6864-6927)
Stop Codons
SH:178

Submission details

Submission ID
OZ412851.1
Submitting group
Date submitted
2026-02-21 06:26:09 UTC
Date released
2026-02-21 06:35:28 UTC
Earliest release date
2026-02-17

Nucleotide mutations

Mutations called relative to the NC_039199.1 reference

Substitutions

  • G126A
  • T129G
  • A132C
  • A162G
  • A168G
  • G177T
  • A189G
  • G195T
  • T198C
  • G199A
  • G208A
  • C213T
  • A231G
  • A237G
  • A250T
  • A255G
  • T259C
  • G270A
    • Deletions
    1593-1598, 2953, 3006, 4684-4722, 6025-6027, 6109, 6110, 6196, 6210-6215, 6802-6804, 6863
    Insertions
    ins_2981:C, ins_6765:GCTGCAACCCAAACACTC, ins_6897:TACAC, ins_6927:CA

    Amino acid mutations

    Mutations called relative to the NC_039199.1 reference

    Substitutions

    F

  • F:V6M
  • F:F9I
  • F:A61T
  • F:R82K
  • F:V122I
  • F:T135N
  • F:N139G
  • F:K143T
  • F:D167E
  • F:R175S
  • F:T223N
  • F:N233Y
  • F:F258I
  • F:D280N
  • F:V286I
  • F:G294E
  • F:K296D
  • F:Q312K

    • G

  • G:K4R
  • G:T10A
  • G:L14F
  • G:R17K
  • G:V18M
  • G:V22I
  • G:A23R
  • G:R24N
  • G:F28Y
  • G:K29R
  • G:S32T
  • G:V34I
  • G:I38L
  • G:T40A
  • G:I43M
  • G:Y48F
  • G:N52D
  • G:K54A

    • L

  • L:K162R
  • L:V182I
  • L:I189V
  • L:V198I
  • L:S228N
  • L:E231K
  • L:L238F
  • L:I245M
  • L:C262S
  • L:R282K
  • L:D303E
  • L:T306S
  • L:K307M
  • L:N310A
  • L:L314S
  • L:H317L
  • L:V320I
  • L:R341K

    • M

  • M:I23V
  • M:E103D
  • M:E111D
  • M:T156I
  • M:K237R
  • M:T241S

    • M2-1

  • M2-1:I37L
  • M2-1:R52K
  • M2-1:S88G
  • M2-1:V108I
  • M2-1:V130I
  • M2-1:R149K
  • M2-1:K160R
  • M2-1:A169T
  • M2-1:E170D

    • M2-2

  • M2-2:E18K
  • M2-2:V22K
  • M2-2:V28A
  • M2-2:D37E
  • M2-2:A41T
  • M2-2:N55S

    • N

  • N:A54T
  • N:A57T
  • N:S71C
  • N:R96K
  • N:I103G
  • N:N106S
  • N:D110E
  • N:A136V
  • N:M201V
  • N:D212E
  • N:H220Y
  • N:K356R
  • N:V385M
  • N:S389N
  • N:N391D

    • P

  • P:L19I
  • P:R28K
  • P:K29R
  • P:P30S
  • P:S35T
  • P:I39V
  • P:N44T
  • P:V46I
  • P:R57K
  • P:K60R
  • P:P61S
  • P:T62S
  • P:I63T
  • P:S65L
  • P:T72A
  • P:K74S
  • P:G75S
  • P:T78I

    • SH

  • SH:I2K
  • SH:V169T
  • SH:K170E
  • SH:K172W
  • SH:P177L
  • SH:T178*
  • SH:D179E
  • SH:E180K
  • SH:Q182R
  • SH:S183F
  • SH:*184S
    • Deletions
    P:119, P:120, SH:175
    Insertions
    ins_G:173:AA, ins_G:180:NQT, ins_G:233:PK

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