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Crimean-Congo Hemorrhagic Fever Virus
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PPD_00AZKQR.1
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Download FASTA
Download metadata TSV
Display Name: France/PPD_00AZKQR.1/2023
G. Piorkowski,
P. Kiwan,
S. Masse,
N. Ayhan,
R. Charrel,
X. de Lamballerie &
A. Falchi
Sample details
Collection date
2023
Country
France
Isolate name
1207
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-01-05 14:11
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
IHU mediterranee, UMR190 Unite des Virus Emergents U1207
INSDC
INSDC accession L
PP025040.1
INSDC accession M
PP025039.1
INSDC accession S
PP025038.1
NCBI release date
2024-06-25
Host
Host taxon ID
297308
Host name - scientific
Ixodoidea
Alignment and QC metrics L
Length L
11246
Completeness L
91.96%
# of SNPs L
228
# of inserted bases L
0
# of deleted bases L
7
# of ambiguous bases L
0
# of unknown bases L
119
# of frame shifts L
0
# of stop codons L
0
Alignment and QC metrics S
Length S
1498
Completeness S
60.23%
# of SNPs S
213
# of inserted bases S
7
# of deleted bases S
11
# of ambiguous bases S
0
# of unknown bases S
495
# of frame shifts S
0
# of stop codons S
0
Alignment and QC metrics M
Length M
5075
Completeness M
88.18%
# of SNPs M
1256
# of inserted bases M
48
# of deleted bases M
50
# of ambiguous bases M
0
# of unknown bases M
345
# of frame shifts M
1
# of stop codons M
0
Frame shifts M
GPC:86-98(nt:348-386)
Submission details
Submission ID
PP025040.1.L/PP025039.1.M/PP025038.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-01-05 14:10:53 UTC
Date released
2026-01-05 14:43:05 UTC
Earliest release date
2024-06-25
Lineage
Segment S Lineage
I
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
A
859
T
L:
A
901
G
L:
C
904
T
L:
G
951
A
L:
G
961
A
L:
C
1015
T
L:
C
1016
T
L:
C
1019
T
L:
A
1120
G
L:
G
1174
A
L:
C
1240
T
L:
A
1338
G
L:
A
1354
T
L:
T
1420
C
L:
C
1495
T
L:
A
1501
G
L:
C
1549
T
L:
A
1555
G
Show more
M
M:
G
242
T
M:
T
246
G
M:
T
247
C
M:
G
248
A
M:
T
249
G
M:
C
250
A
M:
T
251
A
M:
T
253
C
M:
T
254
A
M:
A
255
G
M:
C
256
T
M:
A
257
G
M:
T
259
C
M:
T
260
G
M:
G
261
A
M:
A
262
G
M:
C
264
A
M:
C
266
G
Show more
S
S:
C
160
T
S:
T
163
C
S:
C
166
T
S:
G
171
A
S:
T
172
C
S:
T
175
G
S:
C
178
G
S:
T
181
C
S:
T
182
C
S:
G
184
T
S:
G
196
A
S:
T
199
C
S:
C
208
T
S:
A
209
G
S:
C
214
A
S:
G
229
A
S:
G
232
A
S:
C
235
T
Show more
Deletions
L:12026-12032, M:555-569, M:5166-5200, S:1506-1516
Insertions
ins_M:347:GAAA, ins_M:386:CAGAAACGCGCAGGACTCAAAACCCAAGCACC, ins_M:5264:TTGCACCTTCAA, ins_S:1545:AGATTGT
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
L
52
A
GPC:
S
53
E
GPC:
I
54
T
GPC:
T
55
V
GPC:
L
56
P
GPC:
D
57
S
GPC:
P
58
T
GPC:
S
59
T
GPC:
T
60
I
GPC:
V
61
N
GPC:
T
64
D
GPC:
P
66
Q
GPC:
A
67
V
GPC:
S
68
T
GPC:
G
69
T
GPC:
L
70
D
GPC:
E
71
Y
GPC:
V
76
S
Show more
NP
NP:
S
39
N
NP:
S
52
G
NP:
F
73
Y
NP:
A
100
T
NP:
T
124
A
NP:
G
125
N
NP:
A
154
S
NP:
H
195
K
NP:
V
198
I
NP:
D
199
E
NP:
I
220
V
NP:
T
420
S
RdRp
RdRp:
R
292
Q
RdRp:
H
314
Y
RdRp:
N
421
S
RdRp:
I
505
T
RdRp:
C
648
R
RdRp:
R
764
K
RdRp:
L
765
P
RdRp:
T
767
A
RdRp:
D
771
E
RdRp:
E
776
K
RdRp:
K
809
R
RdRp:
G
812
E
RdRp:
T
876
S
RdRp:
R
896
S
RdRp:
G
1047
E
RdRp:
V
1228
I
RdRp:
N
1367
D
RdRp:
P
1660
T
Show more
Deletions
GPC:108-111, GPC:155-159
Insertions
ins_GPC:131:DVNSLTSPILEAKSSP
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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