This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_00AHUQE.1

Display Name: Austria/PPD_00AHUQE.1/2024-09-17
D. M. Florian, S. W. Aberle & J. V. Camp

Sample details

Collection date
2024-09-17
Country
Austria
Isolate name
Austria/MUW1755409/2024

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-05 14:07insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
2

Authors

Author affiliations
Medical University of Vienna, Center for Virology

INSDC

INSDC accession
NCBI release date
2025-01-08
NCBI update date
2025-01-08

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
1486
Completeness
13.29%
# of SNPs
295
# of inserted bases
32
# of deleted bases
12
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PQ785888.1
Submitting group
Date submitted
2026-01-05 14:06:31 UTC
Date released
2026-01-05 15:03:51 UTC
Earliest release date
2025-01-08

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C9123A
  • A9126G
  • T9129C
  • T9135C
  • C9144T
  • G9147A
  • G9153C
  • T9156A
  • T9159C
  • T9180G
  • A9183T
  • A9186G
  • T9204A
  • C9207T
  • G9210A
  • G9216A
  • C9219A
  • C9222G
    • Deletions
    10467-10470, 10487-10494
    Insertions
    ins_10408:TGTATTGAGT, ins_10417:GTTGTAGTGTTTA, ins_10452:AGA, ins_10461:AG, ins_10483:GAT, ins_10501:T

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS5

  • NS5:R522K
  • NS5:R527K
  • NS5:R546K
  • NS5:A569S
  • NS5:R590K
  • NS5:T641G
  • NS5:V740I
  • NS5:G805K
  • NS5:E816A
  • NS5:K837R
  • NS5:A860T
  • NS5:Q869H
  • NS5:A877S
  • NS5:I878V
  • NS5:D881E
  • NS5:K892R
  • NS5:T898I
  • NS5:L899V
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue