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PPD_0099SJC.1

Display Name: Switzerland/PPD_0099SJC.1/2025-12-19

Sample details

Collection date
2025-12-19
Country
Switzerland
Isolate name
Respiratory swabs

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-05 13:57insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1.2

Authors

Author affiliations
ETH Zurich, Comptuational Evolution Group, Klingelbergstrasse 48, 4056 Basel

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-12-20
NCBI update date
2025-12-21
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15205
Completeness
99.96%
# of SNPs
123
# of inserted bases
45
# of deleted bases
62
# of ambiguous bases
0
# of unknown bases
6
# of frame shifts
1
# of stop codons
0
Frame shifts
G:261-311(nt:5424-5578)

Submission details

Submission ID
OZ387642.1
Submitting group
Date submitted
2026-01-05 13:53:40 UTC
Date released
2026-01-05 14:58:29 UTC
Earliest release date
2025-12-20

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • G1A
  • C3G
  • C489T
  • G513T
  • G579A
  • C583T
  • G599A
  • A951G
  • G1028A
  • T1335C
  • T1384C
  • G1385A
  • T1477C
  • T1645C
  • G1732A
  • G1768A
  • T1846C
  • C2074T
    • Deletions
    973, 5363-5423
    Insertions
    ins_0:CTACAAACTTGCACACTCGAAAAAA, ins_4034:A, ins_5119:CCAAAA, ins_7463:A, ins_7581:A, ins_15092:ATAT, ins_15222:TTTTTTT

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:F12I
  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:A74V
  • G:S100G
  • G:A116T
  • G:T131A
  • G:I137T
  • G:S147R
  • G:P214S
  • G:P221L

    • L

  • L:S169P
  • L:K570R
  • L:R1759K
  • L:T1987I

    • M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

    • N

  • N:I80T
  • N:V97I

    • NS2

  • NS2:D6N
  • NS2:N123S
    • Deletions
    G:240-260
    Insertions
    ins_G:158:PK

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