This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_0073PNM.1

Display Name: Sierra_Leone/PPD_0073PNM.1/2017-12-11
B. R. Amman, B. H. Bird, I. A. Bakarr, J. Bangura, A. J. Schuh, J. Johnny, T. K. Sealy, I. Conteh, A. H. Koroma, I. Foday, E. Amara, A. A. Bangura, A. A. Gbakima, A. Tremeau-Bravard, M. Belaganahalli, J. Dhanota, A. Chow, V. Ontiveros, A. Gibson, J. Turay, K. Patel, J. Graziano, C. Bangura, E. S. Kamanda, ..., R. Emeric

Sample details

Collection date
2017-12-11
Country
Sierra Leone
Isolate name
PREDICT_SLAB4104 Koebat_SL_2017

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-01 12:41insdc_ingest_userOPEN
Data use terms URL

Clade

Clade
MARV.B

Authors

Author affiliations
University of California, Davis, VM: One Health Institute

INSDC

INSDC accession
NCBI release date
2020-02-24
NCBI update date
2020-02-24

Host

Host taxon ID
Host name - scientific
Rousettus aegyptiacus

Alignment and QC metrics

Length
18729
Completeness
97.99%
# of SNPs
1482
# of inserted bases
3
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
MN258362.1
Submitting group
Date submitted
2025-12-01 12:41:47 UTC
Date released
2025-12-01 12:44:29 UTC
Earliest release date
2020-02-24

Nucleotide mutations

Mutations called relative to the NC_001608.3 reference

Substitutions

  • T415C
  • T451G
  • G460A
  • T466C
  • T499C
  • A502G
  • C520T
  • A547G
  • A559G
  • A568G
  • G583A
  • T586C
  • G595A
  • C601T
  • C610T
  • T616C
  • C628T
  • C652T
    • Deletions
    None
    Insertions
    ins_18684:C, ins_18872:G, ins_19111:A

    Amino acid mutations

    Mutations called relative to the NC_001608.3 reference

    Substitutions

    GP

  • GP:K2R
  • GP:F6L
  • GP:L7F
  • GP:T16I
  • GP:N18T
  • GP:N28D
  • GP:A214T
  • GP:I231T
  • GP:P234L
  • GP:L235P
  • GP:L244P
  • GP:K253R
  • GP:T256P
  • GP:D258N
  • GP:S260N
  • GP:A267T
  • GP:R276Q
  • GP:P278T

    • L

  • L:I17V
  • L:I67V
  • L:V70I
  • L:A115T
  • L:G122R
  • L:S128P
  • L:E136D
  • L:V189I
  • L:I214V
  • L:D266E
  • L:D274N
  • L:Q282H
  • L:H335C
  • L:Q342R
  • L:V359I
  • L:S398A
  • L:R443K
  • L:V447M

    • NP

  • NP:S409P
  • NP:M428V
  • NP:D440N
  • NP:G481S
  • NP:P493S
  • NP:R495G
  • NP:L500F
  • NP:N501D
  • NP:R521K
  • NP:A564T
  • NP:A576P
  • NP:A577V
  • NP:N578S
  • NP:P579S
  • NP:M612T
  • NP:D625Y

    • VP24

  • VP24:N17K

    • VP30

  • VP30:H13R
  • VP30:V15A
  • VP30:T18S
  • VP30:H30N
  • VP30:Y34H
  • VP30:H35Y
  • VP30:A48T
  • VP30:A88T
  • VP30:P90L
  • VP30:N93D
  • VP30:T121V
  • VP30:R123K
  • VP30:S159N
  • VP30:M201I
  • VP30:L233S
  • VP30:G278S

    • VP35

  • VP35:R70K

    • VP40

  • VP40:Q37H
  • VP40:T114S
  • VP40:G230S
  • VP40:V303I
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue