This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the
example data
repository. This instance should not be used for analysis.
X
Pathoplexus
Organisms
Measles Virus
SeqSets
News
About
Docs
Login
Pathoplexus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Ebola Zaire
HMPV
Measles Virus
Mpox Virus
RSV-A
RSV-B
West Nile Virus
SeqSets
News
About
Docs
Login
API docs
Governance
Funding
Contact
Status
Measles Virus
|
Browse data
Submit sequences
Tools
Select organism section
Browse data
Submit sequences
Tools
PPD_00728P2.1
Download
Download FASTA
Download metadata TSV
Display Name: USA/PPD_00728P2.1/2025-10-06
E. B. Fox,
J. M. Garrigues &
N. M. Green
Sample details
Collection date
2025-10-06
Country
USA
Admin level 1
California
Isolate name
MVs/California.USA/41.25[D8]
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-11-04 18:25
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Genotype
Genotype
D8
Authors
Author affiliations
Los Angeles County Department of Public Health, Los Angeles County Public Health Laboratories
INSDC
INSDC accession
PX475840.1
NCBI release date
2025-11-02
NCBI update date
2025-11-02
Host
Host taxon ID
9606
Host name - scientific
Homo sapiens
Alignment and QC metrics
Length
15894
Completeness
100.00%
# of SNPs
540
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0
Submission details
Submission ID
PX475840.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-11-04 18:25:45 UTC
Date released
2025-11-04 18:34:52 UTC
Earliest release date
2025-11-02
Nucleotide mutations
Mutations called relative to the
NC_001498.1
reference
Substitutions
A
84
G
G
97
A
G
122
A
T
224
C
A
257
G
G
269
A
G
293
A
G
305
A
C
341
T
A
344
G
G
353
A
G
368
A
A
413
G
T
422
C
T
449
C
C
518
T
C
538
T
T
572
C
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_001498.1
reference
Substitutions
C
C:
D
5
G
C:
K
78
R
C:
G
181
V
F
F:
L
3
P
F:
V
5
A
F:
A
9
V
F:
F
11
V
F:
V
14
A
F:
I
38
T
F:
S
276
A
F:
H
419
R
H
H:
R
175
K
H:
G
235
E
H:
G
243
E
H:
A
267
I
H:
R
334
Q
H:
N
390
I
H:
A
400
T
H:
V
412
L
H:
N
416
D
H:
T
446
S
H:
V
451
M
H:
K
575
Q
H:
V
608
A
L
L:
P
43
S
L:
A
81
T
L:
R
142
K
L:
A
252
T
L:
P
275
S
L:
F
321
C
L:
E
329
D
L:
L
610
S
L:
Y
613
H
L:
R
623
K
L:
E
628
K
L:
V
632
I
L:
N
641
D
L:
I
650
M
L:
T
652
A
L:
D
1037
G
L:
R
1044
G
L:
V
1343
I
Show more
N
N:
S
144
F
N:
K
214
Q
N:
I
406
T
N:
K
441
R
N:
G
443
S
N:
E
446
G
N:
Y
451
N
N:
S
457
I
N:
A
459
L
N:
P
467
L
N:
M
471
T
N:
R
497
K
N:
G
509
S
P
P:
E
54
K
P:
T
92
A
P:
K
195
R
P:
S
219
G
P:
A
269
V
P:
G
270
E
P:
I
282
T
P:
K
350
R
P:
R
355
K
P:
V
414
A
P:
V
446
M
P:
A
459
V
V
V:
E
54
K
V:
T
92
A
V:
K
195
R
V:
S
219
G
V:
G
237
S
Deletions
None
Insertions
None
Load sequences
Report an issue with this sequence or metadata
Create GitHub issue