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PPD_0071N4V.1

Restricted-Use sequence

This sequence is only available under the Restricted Use Terms. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.
Display Name: Pakistan/PPD_0071N4V.1/2023-08-26
M. Ammar, M. Salman, M. Umair, Q. Ali, R. Hakim, S. A. Haider & Z. Jamal

Sample details

Collection date
2023-08-26
Country
Pakistan
Admin level 2
Hogwarts
Isolate name
CCHF/NIHPAK-19/2023

Data use terms

Data use terms
RESTRICTED

Data use terms history

ChangedUserData use terms
2025-10-25 12:37snehasaisnehaRESTRICTED until 2026-10-25
Data use terms URL

Authors

Author affiliations
National Institute of Health, Department of Virology

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics L

Length L
12094
Completeness L
96.89%
# of SNPs L
1442
# of inserted bases L
23
# of deleted bases L
3
# of ambiguous bases L
0
# of unknown bases L
342
# of frame shifts L
0
# of stop codons L
0

Alignment and QC metrics M

Length M
5258
Completeness M
96.76%
# of SNPs M
618
# of inserted bases M
1
# of deleted bases M
0
# of ambiguous bases M
0
# of unknown bases M
65
# of frame shifts M
0
# of stop codons M
0

Alignment and QC metrics S

Length S
1591
Completeness S
93.06%
# of SNPs S
200
# of inserted bases S
1
# of deleted bases S
0
# of ambiguous bases S
0
# of unknown bases S
34
# of frame shifts S
0
# of stop codons S
0

Submission details

Submission ID
test_NIHPAK-19
Version comment
OR964915.1,OR964926.1,OR964937.1
Submitting group
Date submitted
2025-10-25 12:37:12 UTC
Date released
2025-10-25 12:38:48 UTC
Earliest release date
2025-10-25

Lineage

Segment S Lineage
IV.1

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:G32A
  • L:A35G
  • L:T49C
  • L:T61C
  • L:C63G
  • L:C64T
  • L:T65C
  • L:T66C
  • L:G69A
  • L:G71T
  • L:G88A
  • L:G93A
  • L:A109G
  • L:G119A
  • L:A124G
  • L:T131A
  • L:C136T
  • L:T139C

    • M

  • M:C82T
  • M:C85T
  • M:T86C
  • M:A107G
  • M:A117G
  • M:C119T
  • M:C120T
  • M:T122C
  • M:C126T
  • M:A128G
  • M:T137C
  • M:G143A
  • M:A146G
  • M:G147A
  • M:G149A
  • M:C153A
  • M:T155C
  • M:T159C

    • S

  • S:A50G
  • S:G54A
  • S:G67A
  • S:T79C
  • S:G99A
  • S:G100A
  • S:A109G
  • S:A118G
  • S:C142T
  • S:C166T
  • S:G169A
  • S:T172C
  • S:C178A
  • S:T182C
  • S:T199C
  • S:C217T
  • S:G229A
  • S:A268C
    • Deletions
    L:12028-12030
    Insertions
    ins_L:58:T, ins_L:11925:GT, ins_L:12081:TTTAATATCCAACTACTCCA, ins_M:5166:G, ins_S:1577:A

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:I9V
  • GPC:L10F
  • GPC:E19K
  • GPC:H21N
  • GPC:S23L
  • GPC:E26G
  • GPC:R28E
  • GPC:D33H
  • GPC:T34V
  • GPC:G39D
  • GPC:N41S
  • GPC:P42Q
  • GPC:S44P
  • GPC:S53P
  • GPC:I54V
  • GPC:L56P
  • GPC:Y77H
  • GPC:P80S

    • NP

  • NP:R15K
  • NP:V83A
  • NP:D116E
  • NP:T124S
  • NP:G125N
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:V254I
  • NP:R270K
  • NP:S301G
  • NP:A307V
  • NP:Q405L
  • NP:V436I

    • RdRp

  • RdRp:S6N
  • RdRp:G15S
  • RdRp:S19T
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:T163A
  • RdRp:M172V
  • RdRp:S205P
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:S498G
  • RdRp:I505T
  • RdRp:A508V
  • RdRp:K522R
  • RdRp:T720S
    • Deletions
    None
    Insertions
    None

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