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PPD_00713T1.1

Display Name: USA/PPD_00713T1.1/2025-07-31
P. Dykema, N. Hanson, Q. Yang, D. Lucas, S. Jr. Grimmet, J. Johnson & K. Waterman

Sample details

Collection date
2025-07-31
Country
USA
Admin level 1
Washington
Isolate name
WNV/USA/WAPHL-297436/2025

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-15 03:07insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
1A

Authors

Author affiliations
Washington State Department of Health Public Health Labs, Division of Disease Control and Statistics

INSDC

INSDC accession
NCBI release date
2025-10-14
NCBI update date
2025-10-14

Host

Host taxon ID
Host name - scientific
Culex tarsalis

Alignment and QC metrics

Length
10781
Completeness
97.85%
# of SNPs
95
# of inserted bases
0
# of deleted bases
13
# of ambiguous bases
2
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PX453246.1
Submitting group
Date submitted
2025-10-15 03:07:23 UTC
Date released
2025-10-15 03:07:57 UTC
Earliest release date
2025-10-14

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C246T
  • T428C
  • A491G
  • C600T
  • A630G
  • C660T
  • G792A
  • C1119T
  • A1320G
  • A1333G
  • T1442C
  • C1465T
  • C2067T
  • A2097C
  • T2103C
  • C2200T
  • C2448T
  • C2466T
    • Deletions
    10417-10429
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:R188K

    • NS3

  • NS3:T356I

    • NS4A

  • NS4A:R41K
  • NS4A:A85T

    • NS5

  • NS5:K314R

    • capsid

  • capsid:I111T

    • env

  • env:T123A
  • env:V159A
  • env:L167F
  • env:L412F

    • prM

  • prM:K9R
    • Deletions
    None
    Insertions
    None

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