This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the
example data
repository. This instance should not be used for analysis.
X
Pathoplexus
Organisms
HMPV
SeqSets
News
About
Docs
Login
Pathoplexus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Ebola Zaire
HMPV
Measles Virus
Mpox Virus
RSV-A
RSV-B
West Nile Virus
SeqSets
News
About
Docs
Login
API docs
Governance
Funding
Contact
Status
HMPV
|
Browse data
Submit sequences
PPD_0070ZJR.1
Download
Download FASTA
Download metadata TSV
Display Name: USA/PPD_0070ZJR.1/2025-03-08
A. S. Lauring &
L. K. Papalambros
Sample details
Collection date
2025-03-08
Country
USA
Isolate name
hMPV-G25Y82Q7
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-10-12 02:57
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Lineage
Lineage
B2
Authors
Author affiliations
University Of Michigan, Internal Medicine - Infectious Disease
INSDC
INSDC accession
PX444143.1
BioProject accession
PRJNA1181811
NCBI release date
2025-10-11
NCBI update date
2025-10-11
Host
Host taxon ID
9606
Host name - scientific
Homo sapiens
Alignment and QC metrics
Length
13168
Completeness
97.14%
# of SNPs
2357
# of inserted bases
13
# of deleted bases
94
# of ambiguous bases
0
# of unknown bases
281
# of frame shifts
1
# of stop codons
0
Frame shifts
G:207-224(nt:6865-6918)
Submission details
Submission ID
PX444143.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-10-12 02:57:21 UTC
Date released
2025-10-12 02:59:53 UTC
Earliest release date
2025-10-11
Nucleotide mutations
Mutations called relative to the
NC_039199.1
reference
Substitutions
A
21
C
T
24
A
T
26
C
G
34
A
G
36
A
G
63
A
T
70
C
A
72
G
C
78
T
G
105
A
G
126
A
T
129
C
A
132
C
C
150
T
A
162
G
A
168
G
G
177
T
A
189
G
Show more
Deletions
1593-1598, 2930, 3006, 4684-4722, 6046-6048, 6109, 6110, 6196, 6210-6215, 6864, 6919, 6920, 6977-6984, 6997, 6998, 7012-7016, 7035-7037, 7144-7147, 13188, 13204, 13205, 13224-13230
Insertions
ins_2975:C, ins_5813:GGA, ins_6759:GCAACC, ins_7065:TT, ins_7080:T
Amino acid mutations
Mutations called relative to the
NC_039199.1
reference
Substitutions
F
F:
V
6
M
F:
F
9
I
F:
A
61
T
F:
R
82
K
F:
V
122
I
F:
T
135
N
F:
N
139
G
F:
K
142
R
F:
K
143
T
F:
D
167
E
F:
R
175
S
F:
T
223
N
F:
N
233
Y
F:
F
258
I
F:
D
280
N
F:
V
286
I
F:
G
294
E
F:
K
296
D
Show more
G
G:
K
4
R
G:
T
10
A
G:
R
17
K
G:
V
22
I
G:
A
23
R
G:
R
24
S
G:
F
28
Y
G:
K
29
R
G:
S
32
T
G:
V
34
I
G:
I
38
L
G:
T
40
A
G:
I
43
M
G:
Y
48
F
G:
N
52
D
G:
K
54
A
G:
Q
56
L
G:
T
59
M
Show more
L
L:
L
4
F
L:
N
5
C
L:
N
42
K
L:
I
50
V
L:
K
61
R
L:
N
65
M
L:
S
66
T
L:
I
75
V
L:
V
89
T
L:
T
109
S
L:
N
113
S
L:
S
123
T
L:
D
127
N
L:
S
132
N
L:
S
141
V
L:
K
162
R
L:
V
182
I
L:
I
189
V
Show more
M
M:
I
23
V
M:
E
103
D
M:
E
111
D
M:
T
156
I
M:
K
237
R
M:
T
241
S
M2-1
M2-1:
I
37
L
M2-1:
R
52
K
M2-1:
S
88
G
M2-1:
V
108
I
M2-1:
S
121
N
M2-1:
V
130
I
M2-1:
R
149
K
M2-1:
K
160
R
M2-1:
A
169
T
M2-1:
E
170
D
M2-2
M2-2:
E
18
K
M2-2:
V
22
K
M2-2:
V
28
A
M2-2:
D
37
E
M2-2:
A
41
T
M2-2:
N
55
S
N
N:
A
54
T
N:
A
57
T
N:
S
71
C
N:
R
96
K
N:
I
103
G
N:
N
106
S
N:
D
110
E
N:
A
136
V
N:
M
201
V
N:
D
212
E
N:
H
220
Y
N:
K
356
R
N:
V
385
M
N:
S
389
N
N:
N
391
D
P
P:
L
19
V
P:
R
28
K
P:
K
29
R
P:
P
30
S
P:
S
35
T
P:
I
39
V
P:
N
44
T
P:
V
46
I
P:
R
57
K
P:
K
60
R
P:
P
61
S
P:
T
62
S
P:
I
63
T
P:
S
65
L
P:
T
72
A
P:
K
74
S
P:
G
75
S
P:
E
81
T
Show more
SH
SH:
I
2
K
SH:
T
17
N
SH:
D
25
N
SH:
V
30
L
SH:
V
33
A
SH:
L
44
F
SH:
I
50
V
SH:
I
61
A
SH:
S
64
L
SH:
T
66
N
SH:
S
73
T
SH:
S
74
K
SH:
S
75
L
SH:
T
82
I
SH:
K
83
R
SH:
T
84
P
SH:
T
85
I
SH:
L
86
P
Show more
Deletions
G:163-166, G:189, G:201, G:225, P:119, P:120
Insertions
ins_G:141:RQTTQTT, ins_SH:108:R
Load sequences
Report an issue with this sequence or metadata
Create GitHub issue