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PPD_006Y55G.1

Display Name: Ireland/PPD_006Y55G.1/2025-08-17
M. Carr, L. Fahey, B. Keogan, A. Rice, D. Hare & C. F. De Gascun

Sample details

Collection date
2025-08-17
Country
Ireland
Isolate name
GIRL00063079

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-04 18:42insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
hMPXV-1
Lineage
F.2

Authors

Author affiliations
National Viral Reference Laboratory, University College Dublin, Ireland, Dublin, Co. Dublin

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-09-19
NCBI update date
2025-09-26

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
190718
Completeness
91.75%
# of SNPs
87
# of inserted bases
0
# of deleted bases
12
# of ambiguous bases
0
# of unknown bases
9787
# of frame shifts
1
# of stop codons
0
Frame shifts
OPG197:20-101(nt:169726-169972)

Submission details

Submission ID
OZ319640.1
Submitting group
Date submitted
2025-10-04 18:42:10 UTC
Date released
2025-10-04 18:42:55 UTC
Earliest release date
2025-09-19

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • C882T
  • G1262A
  • G2591A
  • G3111A
  • G3522A
  • C3818T
  • C7771T
  • G12690A
  • G14000T
  • G15428A
  • C20453T
  • G21723A
  • C22167T
  • C23564T
  • G25661A
  • C27826T
  • T28175C
  • G30367A
    • Deletions
    133177-133186, 169724, 169725
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_063383.1 reference

    Substitutions

    OPG001

  • OPG001:S105L
  • OPG001:D232N

    • OPG002

  • OPG002:S54F

    • OPG003

  • OPG003:D264N

    • OPG023

  • OPG023:P71S

    • OPG025

  • OPG025:A423D

    • OPG043

  • OPG043:E44K

    • OPG047

  • OPG047:R48C

    • OPG053

  • OPG053:P78S

    • OPG056

  • OPG056:E125K

    • OPG057

  • OPG057:E353K

    • OPG071

  • OPG071:L108F

    • OPG072

  • OPG072:D56N

    • OPG092

  • OPG092:D196N

    • OPG093

  • OPG093:S30L
  • OPG093:D88N

    • OPG094

  • OPG094:M142I

    • OPG098

  • OPG098:E162K

    • OPG105

  • OPG105:S734L
  • OPG105:R1263K

    • OPG109

  • OPG109:H740Y

    • OPG118

  • OPG118:K606E

    • OPG120

  • OPG120:D151N

    • OPG136

  • OPG136:D98N

    • OPG139

  • OPG139:A17T

    • OPG145

  • OPG145:E62K
  • OPG145:R243Q
  • OPG145:E435K

    • OPG150

  • OPG150:S307L

    • OPG174

  • OPG174:D288N

    • OPG176

  • OPG176:H221Y

    • OPG188

  • OPG188:E12K

    • OPG193

  • OPG193:L263F

    • OPG210

  • OPG210:D209N
  • OPG210:P722S
  • OPG210:M1741I
    • Deletions
    OPG197:19
    Insertions
    None

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