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PPD_006Y20V.1

Display Name: USA/PPD_006Y20V.1/2025-08-26
S. Green, K. Kunstman, H. Barbian, F. Araujo Perez, A. Kittner, S. Bobrovska & E. Newcomer

Sample details

Collection date
2025-08-26
Country
USA
Admin level 1
IL, Chicago
Isolate name
hMpxV/USA/IL-RIPHL-050-0263/2025

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-30 20:45insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
hMPXV-1
Lineage
F.2

Authors

Author affiliations
Rush University Medical Center, Regional Innovative Public Health Laboratory (RIPHL)

INSDC

INSDC accession
NCBI release date
2025-09-30
NCBI update date
2025-09-30

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
195978
Completeness
98.70%
# of SNPs
95
# of inserted bases
39
# of deleted bases
112
# of ambiguous bases
0
# of unknown bases
1404
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PX439645.1
Submitting group
Date submitted
2025-09-30 20:45:17 UTC
Date released
2025-09-30 20:45:47 UTC
Earliest release date
2025-09-30

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • C882T
  • G1262A
  • G2591A
  • G3111A
  • G3522A
  • C3818T
  • C7771T
  • G12690A
  • G14000T
  • G16063A
  • A18769G
  • C20453T
  • G21723A
  • C22167T
  • C23564T
  • G25213A
  • G25661A
  • C27826T
    • Deletions
    133177-133186, 179145-179243, 196622-196624
    Insertions
    ins_133102:TTT, ins_173301:NNNNNNNNNNNNNNNNNNNNNNATATATATATATAT

    Amino acid mutations

    Mutations called relative to the NC_063383.1 reference

    Substitutions

    OPG001

  • OPG001:S105L
  • OPG001:D232N

    • OPG002

  • OPG002:S54F

    • OPG003

  • OPG003:D264N

    • OPG023

  • OPG023:P71S

    • OPG025

  • OPG025:A423D

    • OPG040

  • OPG040:S89F

    • OPG043

  • OPG043:E44K

    • OPG047

  • OPG047:R48C

    • OPG053

  • OPG053:P78S

    • OPG056

  • OPG056:E125K

    • OPG057

  • OPG057:E353K

    • OPG071

  • OPG071:L108F

    • OPG072

  • OPG072:D56N

    • OPG092

  • OPG092:D196N

    • OPG093

  • OPG093:S30L
  • OPG093:D88N

    • OPG094

  • OPG094:M142I

    • OPG098

  • OPG098:E162K

    • OPG105

  • OPG105:S734L

    • OPG109

  • OPG109:H740Y

    • OPG118

  • OPG118:K606E

    • OPG120

  • OPG120:D151N

    • OPG136

  • OPG136:D98N

    • OPG139

  • OPG139:A17T

    • OPG145

  • OPG145:E62K
  • OPG145:R243Q
  • OPG145:E435K

    • OPG150

  • OPG150:S307L

    • OPG176

  • OPG176:H221Y

    • OPG188

  • OPG188:E12K

    • OPG193

  • OPG193:L263F

    • OPG210

  • OPG210:D209N
  • OPG210:P722S
  • OPG210:M1741I
    • Deletions
    None
    Insertions
    None

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