This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_006V9XZ.1

Display Name: Switzerland/PPD_006V9XZ.1/2025-04-21

Sample details

Collection date
2025-04-21
Country
Switzerland
Admin level 1
ZH
Isolate name
hRSV/B/Switzerland/ZH-UZH-IMV-3BA711F8/2025

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-19 10:01insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1

Authors

Author affiliations
SIB, Ch. des Mines 9

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-06-27
NCBI update date
2025-07-01

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15208
Completeness
99.82%
# of SNPs
144
# of inserted bases
16
# of deleted bases
2
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
OZ276481.1
Submitting group
Date submitted
2025-09-19 10:01:21 UTC
Date released
2025-09-19 10:05:31 UTC
Earliest release date
2025-06-27

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • G1A
  • C3G
  • A16G
  • A134G
  • A473G
  • G513T
  • G579A
  • C688T
  • T707C
  • G830A
  • C998A
  • G1385A
  • A1414G
  • G1732A
  • T1846C
  • C2074T
  • C2198T
  • C2542T
    • Deletions
    973, 4586
    Insertions
    ins_0:CTCGNAAAAA, ins_15092:ATATAT

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:R42K
  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:L20F
  • G:A74V
  • G:S100G
  • G:T131A
  • G:I137T
  • G:F166Y
  • G:P214S
  • G:P221L
  • G:I252K
  • G:K256N
  • G:S265P
  • G:I268T
  • G:S275P
  • G:Y285H

    • L

  • L:K570R
  • L:R1759K
  • L:V1965I
  • L:T1987I

    • M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

    • N

  • N:V97I

    • NS2

  • NS2:E83K

    • P

  • P:P80S
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue