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PPD_006U1Z5.1

Display Name: Guinea/PPD_006U1Z5.1/2024-12-11
E. V. Naidenova, Y. M. Krasnov, K. S. Zakharov, M. Y. Kartashov, A. V. Shipovalov, A. B. Ibrahim, E. A. Basov, A. P. Smolina, N. P. Guseva, T. A. Polunina, N. V. Kotova, S. D. Katyshev, S. Boumbaly & M. S. Traore

Sample details

Collection date
2024-12-11
Country
Guinea
Isolate name
650

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-19 09:57insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Russian Antiplague Research Institute 'Microbe', Microbiology

INSDC

INSDC accession L
INSDC accession M
INSDC accession S
NCBI release date
2025-08-09

Host

Host taxon ID
Host name - scientific
Rhipicephalus microplus

Alignment and QC metrics L

Length L
11970
Completeness L
92.24%
# of SNPs L
417
# of inserted bases L
3
# of deleted bases L
0
# of ambiguous bases L
0
# of unknown bases L
799
# of frame shifts L
0
# of stop codons L
0

Alignment and QC metrics M

Length M
2921
Completeness M
38.58%
# of SNPs M
301
# of inserted bases M
0
# of deleted bases M
0
# of ambiguous bases M
0
# of unknown bases M
851
# of frame shifts M
0
# of stop codons M
0

Alignment and QC metrics S

Length S
1655
Completeness S
93.18%
# of SNPs S
198
# of inserted bases S
1
# of deleted bases S
0
# of ambiguous bases S
0
# of unknown bases S
96
# of frame shifts S
0
# of stop codons S
0

Submission details

Submission ID
PV987605.1.L/PV987597.1.M/PV987589.1.S
Submitting group
Date submitted
2025-09-19 09:57:06 UTC
Date released
2025-09-19 09:59:00 UTC
Earliest release date
2025-08-09

Lineage

Segment S Lineage
IV.1

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:G93A
  • L:G112C
  • L:A113G
  • L:C133T
  • L:C193T
  • L:C205T
  • L:G217A
  • L:A220G
  • L:C223T
  • L:T229C
  • L:T253C
  • L:T254A
  • L:G286A
  • L:G301A
  • L:C313T
  • L:A316G
  • L:C331T
  • L:T340C

    • M

  • M:T1552A
  • M:A1555G
  • M:A1556G
  • M:G1558A
  • M:A1577T
  • M:T1586A
  • M:T1587C
  • M:G1589A
  • M:G1592A
  • M:G1595A
  • M:G1604A
  • M:A1607G
  • M:A1628C
  • M:A1629C
  • M:C1631T
  • M:C1634T
  • M:T1637C
  • M:T1644C

    • S

  • S:G20T
  • S:G54A
  • S:C82T
  • S:A118G
  • S:G136A
  • S:C142T
  • S:C154T
  • S:T155C
  • S:C166T
  • S:G169A
  • S:T175C
  • S:C178A
  • S:T182C
  • S:G189A
  • S:G190A
  • S:C208T
  • S:C217T
  • S:C235T
    • Deletions
    None
    Insertions
    ins_L:6457:AAN, ins_S:1579:C

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:K488R
  • GPC:G489E
  • GPC:T513P
  • GPC:P523S
  • GPC:S524D
  • GPC:D525G
  • GPC:I541V
  • GPC:G543N
  • GPC:V578I
  • GPC:R579K
  • GPC:T589S
  • GPC:G590E
  • GPC:K591R
  • GPC:N592P
  • GPC:V598T
  • GPC:K601E
  • GPC:Y606F
  • GPC:R609K

    • NP

  • NP:Y34H
  • NP:R45K
  • NP:D116E
  • NP:T124S
  • NP:G125N
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:A271S
  • NP:S301G
  • NP:Q405L
  • NP:V436I
  • NP:T439K

    • RdRp

  • RdRp:S6N
  • RdRp:I13V
  • RdRp:Y60N
  • RdRp:N206Y
  • RdRp:C422Y
  • RdRp:S498N
  • RdRp:I505T
  • RdRp:R764K
  • RdRp:T767A
  • RdRp:P774L
  • RdRp:S782D
  • RdRp:K809R
  • RdRp:G812E
  • RdRp:T876S
  • RdRp:N885K
  • RdRp:A1038T
  • RdRp:K1167R
  • RdRp:V1228I
    • Deletions
    None
    Insertions
    ins_RdRp:2127:X

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