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Crimean-Congo Hemorrhagic Fever Virus
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Submit sequences
PPD_006U1G6.1
Download
Download FASTA
Download metadata TSV
Display Name: Tajikistan/PPD_006U1G6.1/2023-05-23
J. D'Addiego,
M. Mullojanova,
T. Hikmatov,
F. Tishkova &
R. Hewson
Sample details
Collection date
2023-05-23
Country
Tajikistan
Isolate name
CCHFV_30_185
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-09-19 09:57
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
UK Health Security Agency, Research & Evaluation
INSDC
INSDC accession L
PV953859.1
INSDC accession M
PV953858.1
INSDC accession S
PV953857.1
NCBI release date
2025-07-27
Host
Host taxon ID
176092
Host name - scientific
Hyalomma anatolicum
Alignment and QC metrics L
Length L
12122
Completeness L
95.31%
# of SNPs L
1420
# of inserted bases L
40
# of deleted bases L
3
# of ambiguous bases L
245
# of unknown bases L
300
# of frame shifts L
0
# of stop codons L
0
Alignment and QC metrics M
Length M
4809
Completeness M
89.00%
# of SNPs M
847
# of inserted bases M
1
# of deleted bases M
0
# of ambiguous bases M
32
# of unknown bases M
0
# of frame shifts M
0
# of stop codons M
0
Alignment and QC metrics S
Length S
1671
Completeness S
97.67%
# of SNPs S
209
# of inserted bases S
1
# of deleted bases S
0
# of ambiguous bases S
37
# of unknown bases S
0
# of frame shifts S
0
# of stop codons S
0
Submission details
Submission ID
PV953859.1.L/PV953858.1.M/PV953857.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-09-19 09:57:06 UTC
Date released
2025-09-19 09:59:00 UTC
Earliest release date
2025-07-27
Lineage
Segment S Lineage
IV.2
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
A
35
G
L:
G
43
C
L:
C
48
T
L:
T
49
C
L:
C
59
T
L:
T
62
C
L:
C
64
T
L:
T
65
G
L:
G
71
T
L:
A
72
T
L:
C
85
T
L:
G
93
A
L:
A
109
G
L:
G
112
A
L:
T
121
C
L:
T
131
A
L:
C
136
T
L:
T
151
C
Show more
M
M:
T
542
G
M:
G
551
C
M:
T
554
C
M:
C
555
A
M:
T
557
A
M:
G
558
A
M:
G
559
A
M:
C
561
T
M:
T
566
A
M:
A
569
G
M:
A
570
G
M:
C
581
A
M:
T
582
G
M:
G
584
A
M:
G
585
A
M:
G
586
A
M:
A
587
T
M:
A
588
C
Show more
S
S:
T
48
C
S:
G
54
A
S:
A
61
G
S:
C
64
T
S:
G
67
A
S:
T
79
C
S:
G
99
A
S:
A
118
G
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
C
178
A
S:
T
182
C
S:
G
190
A
S:
G
196
A
S:
C
214
T
S:
C
217
T
S:
G
229
A
Show more
Deletions
L:11996, L:12086, L:12087
Insertions
ins_L:67:CT, ins_L:11931:AT, ins_L:12051:TAGTCCAATTCTTTCARY, ins_L:12108:YTGATTATTTCTAGGGTG, ins_M:5171:C, ins_S:1579:A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
P
155
T
GPC:
G
156
K
GPC:
P
157
S
GPC:
D
158
E
GPC:
T
160
A
GPC:
S
164
A
GPC:
G
165
N
GPC:
T
166
P
GPC:
G
167
E
GPC:
E
169
A
GPC:
S
171
I
GPC:
A
172
E
GPC:
T
173
N
GPC:
P
176
Q
GPC:
P
178
L
GPC:
V
179
A
GPC:
S
180
A
GPC:
N
181
S
Show more
NP
NP:
R
15
K
NP:
D
116
E
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
90
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
Show more
Deletions
None
Insertions
None
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