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Crimean-Congo Hemorrhagic Fever Virus
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PPD_006U112.1
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Download FASTA
Download metadata TSV
Display Name: Tajikistan/PPD_006U112.1/2023-05-07
J. D'Addiego,
M. Mullojanova,
T. Hikmatov,
F. Tishkova &
R. Hewson
Sample details
Collection date
2023-05-07
Country
Tajikistan
Isolate name
CCHFV_27_27
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-09-19 09:57
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
UK Health Security Agency, Research & Evaluation
INSDC
INSDC accession L
PV738571.1
INSDC accession S
PV738570.1
NCBI release date
2025-06-15
Host
Host taxon ID
176092
Host name - scientific
Hyalomma anatolicum
Alignment and QC metrics L
Length L
11876
Completeness L
79.43%
# of SNPs L
1249
# of inserted bases L
2
# of deleted bases L
0
# of ambiguous bases L
25
# of unknown bases L
2232
# of frame shifts L
0
# of stop codons L
0
Alignment and QC metrics S
Length S
1249
Completeness S
73.80%
# of SNPs S
177
# of inserted bases S
1
# of deleted bases S
0
# of ambiguous bases S
5
# of unknown bases S
9
# of frame shifts S
0
# of stop codons S
0
Submission details
Submission ID
PV738571.1.L/PV738570.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-09-19 09:57:06 UTC
Date released
2025-09-19 09:59:00 UTC
Earliest release date
2025-06-15
Lineage
Segment S Lineage
IV.2
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
A
35
G
L:
G
43
C
L:
C
48
T
L:
T
49
C
L:
A
53
G
L:
C
59
T
L:
T
62
C
L:
C
64
T
L:
T
65
G
L:
G
71
T
L:
A
72
C
L:
C
85
T
L:
G
93
A
L:
A
109
G
L:
G
112
A
L:
T
121
C
L:
T
131
A
L:
C
136
T
Show more
S
S:
A
425
G
S:
G
428
A
S:
G
429
A
S:
A
439
G
S:
C
445
T
S:
T
446
C
S:
G
448
C
S:
A
460
G
S:
C
472
T
S:
C
484
A
S:
C
487
T
S:
A
490
G
S:
T
496
C
S:
C
497
T
S:
G
499
A
S:
A
503
C
S:
A
520
G
S:
G
538
A
Show more
Deletions
None
Insertions
ins_L:67:CT, ins_S:1577:A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
NP
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
G
259
E
NP:
R
270
K
NP:
S
275
N
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
90
I
RdRp:
I
114
V
RdRp:
S
124
C
RdRp:
I
157
M
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
Show more
Deletions
None
Insertions
None
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