This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_006U0VE.1

Display Name: Kazakhstan/PPD_006U0VE.1/2024
B. M. A. Maxat, M. G. K. Gulzhan, M. K. T. Kydyrbay, S. S. K. Serik, K. B. A. Balzhan & N. B. R. Botagoz

Sample details

Collection date
2024
Country
Kazakhstan
Admin level 1
Turkestan, Arys
Isolate name
KAZ/154/2025

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-19 09:57insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Kazakh Scientific Research Veterinary Institute

INSDC

INSDC accession L
INSDC accession S
NCBI release date
2025-05-21

Host

Host taxon ID
Host name - scientific
Ixodoidea

Alignment and QC metrics L

Length L
528
Completeness L
4.36%
# of SNPs L
88
# of inserted bases L
0
# of deleted bases L
0
# of ambiguous bases L
0
# of unknown bases L
0
# of frame shifts L
0
# of stop codons L
0

Alignment and QC metrics S

Length S
484
Completeness S
28.95%
# of SNPs S
72
# of inserted bases S
0
# of deleted bases S
0
# of ambiguous bases S
0
# of unknown bases S
0
# of frame shifts S
0
# of stop codons S
0

Submission details

Submission ID
PV646618.1.L/PV646617.1.S
Submitting group
Date submitted
2025-09-19 09:57:06 UTC
Date released
2025-09-19 09:59:00 UTC
Earliest release date
2025-05-21

Lineage

Segment S Lineage
IV.2

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:A526G
  • L:C529T
  • L:T535C
  • L:G538T
  • L:C541T
  • L:T550G
  • L:G553A
  • L:A563G
  • L:A565T
  • L:A571G
  • L:G578A
  • L:G583A
  • L:C586T
  • L:G589A
  • L:A590G
  • L:C595T
  • L:G597A
  • L:T601C

    • S

  • S:T157C
  • S:C166T
  • S:G171A
  • S:C178A
  • S:A180G
  • S:T182C
  • S:G190A
  • S:G196A
  • S:C217T
  • S:G229A
  • S:C235T
  • S:T250A
  • S:G256A
  • S:A268C
  • S:G271A
  • S:T277C
  • S:T283C
  • S:T289C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:S39N
  • NP:N42S
  • NP:D116E
  • NP:T124A
  • NP:G125N
  • NP:N150H

    • RdRp

  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:T215A
  • RdRp:K275R
  • RdRp:I279V
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue