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PPD_006TNP6.1

Display Name: Spain/PPD_006TNP6.1/2024-09-20
C. S. Casimiro-Soriguer, J. Perez-Florido, J. L. Fernandez-Rueda, I. Pedrosa-Corral, V. Guillot-Sulay, N. Lorusso, L. J. Martinez-Gonzalez, J. M. Navarro-Mari, J. Dopazo, S. Sanbonmatsu-Gamez, E. A. Robles, M. Lara, A. Aguado, M. A. Rodriguez Iglesias, J. A. Lepe, F. Garcia, M. Perez-Alegre, E. Andujar, V. E. Jimenez, L. P. Camino, N. Loruso, U. Ameyugo, I. M. Vazquez, C. M. Lozano & J. A. Chaves

Sample details

Collection date
2024-09-20
Country
Spain
Isolate name
unavailable

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-19 09:51insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
1A

Authors

Author affiliations
Clinical Bioinformatics Area, Hospital Virgen del Rocio, Avenida Manuel Siurot s/n, 41003

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-08-01
NCBI update date
2025-08-02
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
10846
Completeness
96.36%
# of SNPs
446
# of inserted bases
0
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
218
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
OZ293778.1
Submitting group
Date submitted
2025-09-19 09:51:48 UTC
Date released
2025-09-19 09:52:49 UTC
Earliest release date
2025-08-01

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A53G
  • T195A
  • T234C
  • C282T
  • A321G
  • C340T
  • G354A
  • G447T
  • C483T
  • G492A
  • G495T
  • C561T
  • C600T
  • T606C
  • T615C
  • A630G
  • T639C
  • G786A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:A70S

    • NS2A

  • NS2A:L158M

    • NS2B

  • NS2B:V103A

    • NS3

  • NS3:I175V
  • NS3:P249T
  • NS3:T356I

    • NS4A

  • NS4A:A85V

    • NS4B

  • NS4B:E249D

    • NS5

  • NS5:K280R

    • env

  • env:R93K
  • env:I126T
  • env:V159I
  • env:L167F
    • Deletions
    None
    Insertions
    None

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