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PPD_006TMWT.1

Display Name: France/PPD_006TMWT.1/2024-09-03
A. Fontaine, R. Klitting, B. Pastorino, M. Gilles, G. Piorkowski, R. Amaral, T. Canivez, M. Gueulen, M. Peden, L. Bosio, L. Pezzi, N. Ayhan, G. Durand, G. Grard, X. de Lamballerie, G. LAmbert & R. GutierrezClimente

Sample details

Collection date
2024-09-03
Country
France
Admin level 1
Occitanie

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-19 09:51insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
2

Authors

Author affiliations
Aix-Marseille Universite, Universita di Corsica, IRD 190, Inserm 1207, IRBA, Marseille

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-06-05
NCBI update date
2025-06-06

Host

Host taxon ID
Host name - scientific
Culicidae

Alignment and QC metrics

Length
10908
Completeness
98.70%
# of SNPs
2217
# of inserted bases
45
# of deleted bases
23
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
1
# of stop codons
0
Frame shifts
NS4B:31-33(nt:7006-7014)

Submission details

Submission ID
OZ261141.1
Submitting group
Date submitted
2025-09-19 09:51:48 UTC
Date released
2025-09-19 09:52:49 UTC
Earliest release date
2025-06-05

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C52T
  • C123T
  • G126A
  • G128A
  • A156T
  • T167G
  • G168A
  • T180A
  • T199C
  • C204T
  • C210T
  • C216G
  • G219A
  • G222C
  • A231T
  • T234C
  • C246T
  • G261A
    • Deletions
    6994-6996, 10444, 10457-10462, 10467-10470, 10487-10494, 10904
    Insertions
    ins_7005:GTTGA, ins_7014:G, ins_10408:TGTATTGAGT, ins_10417:GTTGTAGTGTTTA, ins_10439:TTACTTAGGCTG, ins_10483:GTT, ins_10501:T

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    2K

  • 2K:M15L

    • NS1

  • NS1:S9G
  • NS1:Y34F
  • NS1:K44R
  • NS1:K51A
  • NS1:V71I
  • NS1:E94N
  • NS1:S99A
  • NS1:T105A
  • NS1:K110R
  • NS1:I113M
  • NS1:L123I
  • NS1:V135I
  • NS1:K141E
  • NS1:Q146A
  • NS1:L153M
  • NS1:K170R
  • NS1:V171I
  • NS1:S174T

    • NS2A

  • NS2A:M34I
  • NS2A:L38M
  • NS2A:I39L
  • NS2A:S68A
  • NS2A:M90L
  • NS2A:N104S
  • NS2A:V112A
  • NS2A:H119Y
  • NS2A:R122K
  • NS2A:Q123N
  • NS2A:I124V
  • NS2A:L126S
  • NS2A:I129V
  • NS2A:A137S
  • NS2A:T147S
  • NS2A:T150N
  • NS2A:R167K
  • NS2A:I183V

    • NS2B

  • NS2B:A41V
  • NS2B:S61T
  • NS2B:M88I
  • NS2B:V103A
  • NS2B:V120I

    • NS3

  • NS3:K11R
  • NS3:Q92H
  • NS3:F130Y
  • NS3:D172E
  • NS3:I175A
  • NS3:R203K
  • NS3:R215K
  • NS3:A233S
  • NS3:P249H
  • NS3:N253S
  • NS3:V283I
  • NS3:S302A
  • NS3:S331A
  • NS3:L336M
  • NS3:S347T
  • NS3:T356V
  • NS3:V384I
  • NS3:T436E

    • NS4A

  • NS4A:I6V
  • NS4A:K11R
  • NS4A:T64S
  • NS4A:M65L
  • NS4A:A85V
  • NS4A:V86I
  • NS4A:V89A

    • NS4B

  • NS4B:S11N
  • NS4B:F17L
  • NS4B:Q19H
  • NS4B:R20K
  • NS4B:I21P
  • NS4B:T116A
  • NS4B:I168V
  • NS4B:L183M
  • NS4B:K193R
  • NS4B:I202T

    • NS5

  • NS5:Q18H
  • NS5:I33T
  • NS5:K45R
  • NS5:V49I
  • NS5:I78V
  • NS5:R101K
  • NS5:C139A
  • NS5:C140S
  • NS5:I162V
  • NS5:R177K
  • NS5:V181I
  • NS5:K190R
  • NS5:L197T
  • NS5:R224H
  • NS5:V229I
  • NS5:R247K
  • NS5:Y254F
  • NS5:R287K

    • capsid

  • capsid:S11N
  • capsid:V24G
  • capsid:S100T
  • capsid:K108T
  • capsid:T109A
  • capsid:I111F
  • capsid:A112T
  • capsid:V113I
  • capsid:M114L
  • capsid:I115L
  • capsid:S120C
  • capsid:V121A

    • env

  • env:E55D
  • env:T64S
  • env:K71R
  • env:D83E
  • env:R93K
  • env:S122T
  • env:I126T
  • env:R128W
  • env:T129I
  • env:L131Q
  • env:V159A
  • env:L167F
  • env:A172S
  • env:N199S
  • env:T205S
  • env:T208A
  • env:T210S
  • env:V232T

    • prM

  • prM:M44L
  • prM:D46E
  • prM:S57A
  • prM:A73S
  • prM:M112L
  • prM:V156A
  • prM:V157I
    • Deletions
    NS4B:28-30
    Insertions
    ins_NS4B:22:TRETTLG

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