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PPD_006THT3.1

Display Name: Slovakia/PPD_006THT3.1/2025-04-01
T. Sladecek

Sample details

Collection date
2025-04-01
Collection date (lower bound)
2025-04-01
Collection date (upper bound)
2025-04-01
Isolate name
RNA
Collection country
Slovakia

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-11 17:45insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A.D.1.6

Authors

Author affiliations
Science Park of Comenius University of Bratislava, Ilkovicova 8, 841 04 Bratislava

INSDC

NCBI release date
2025-06-21
NCBI update date
2025-06-25
Raw reads accession
BioProject accession
BioSample accession
INSDC accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15223
Total SNPs
231
Total inserted nucs
0
Total deleted nucs
2
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
100.00%

Submission details

Submission ID
OZ274164.1
Submitting group
Date submitted
2025-09-11 17:45:44 UTC
Date released
2025-09-11 17:49:10 UTC
Earliest release date
2025-06-21

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • T66A
  • C90T
  • C183T
  • G198A
  • A303T
  • C360T
  • A399G
  • T497C
  • G551A
  • G555A
  • C626T
  • G664A
  • T697C
  • G747A
  • G1000A
  • C1012T
  • T1035A
  • C1046T
    • Deletions
    4175, 4592
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:G106E
  • G:P120L
  • G:S121I
  • G:I134K
  • G:L142S
  • G:P143S
  • G:T207A
  • G:P217S
  • G:T219N
  • G:G224E
  • G:N242T
  • G:S243I
  • G:K262E
  • G:I265L
  • G:D284G

    • L

  • L:N143D
  • L:P171L
  • L:T179S
  • L:R256K
  • L:Y598H
  • L:M1225I
  • L:L1438Q
  • L:I1653V
  • L:K1661N
  • L:H1690Y
  • L:H1707Q
  • L:N1719Y
  • L:N1723S
  • L:N1724D
  • L:E1725G
  • L:G1731D
  • L:Y2163N

    • M

  • M:M43I

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:Y26C
  • M2-2:S46N

    • N

  • N:V352A

    • NS2

  • NS2:P10S
  • NS2:R50K

    • P

  • P:V43I
  • P:L55P

    • SH

  • SH:I38S
    • Deletions
    None
    Insertions
    None

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