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PPD_006R35Y.1

Display Name: USA/PPD_006R35Y.1/2025-06-01
E. Young

Submission details

Submission ID
PX121935.1
Submitting group
Date submitted
2025-08-27 16:37:32 UTC
Date released
2025-08-27 16:50:55 UTC

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-08-27 16:38insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Utah Public Health Laboratory, Department of Health

INSDC

BioSample accession
INSDC accession
Raw reads accession
NCBI release date
2025-08-20
NCBI update date
2025-08-20

Alignment and QC metrics

Completeness
95.95%
Length
15832
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
507
Total unknown nucs
582

Sample details

Earliest release date
2025-08-20
Collection subdivision level 1
Utah
Collection country
USA
Collection date
2025-06-01
Collection date (lower bound)
2025-06-01
Collection date (upper bound)
2025-06-01
Isolate name
MVs/Utah.USA/23.25/5[D8]

Genotype

Genotype
D8

Host

Host name - scientific
Homo sapiens
Host taxon ID

Nucleotide mutations

Mutations called relative to the NC_001498.1 reference

Substitutions

  • A84G
  • G97A
  • G122A
  • T224C
  • A257G
  • G269A
  • G293A
  • G305A
  • C341T
  • A344G
  • G353A
  • G368A
  • A413G
  • T422C
  • T449C
  • C518T
  • C538T
  • T572C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_001498.1 reference

    Substitutions

    C

  • C:D5G
  • C:K78R
  • C:G181V

    • F

  • F:A9V
  • F:F11V
  • F:S276A
  • F:P338S
  • F:H419R

    • H

  • H:R175K
  • H:G235E
  • H:G243E
  • H:A267I
  • H:R334Q
  • H:N390I
  • H:A400T
  • H:V412L
  • H:N416D
  • H:T446S
  • H:V451M
  • H:K575Q
  • H:V608A

    • L

  • L:P43S
  • L:A81T
  • L:R142K
  • L:A252T
  • L:P275S
  • L:F321C
  • L:E329D
  • L:L610S
  • L:Y613H
  • L:R623K
  • L:E628K
  • L:V632I
  • L:N641D
  • L:I650M
  • L:T652A
  • L:D1037G
  • L:R1044G
  • L:V1343I

    • N

  • N:S144F
  • N:K214Q
  • N:I406T
  • N:K441R
  • N:G443S
  • N:E446G
  • N:Y451N
  • N:S457I
  • N:A459L
  • N:P467L
  • N:M471T
  • N:R497K
  • N:G509S

    • P

  • P:E54K
  • P:T92A
  • P:K195R
  • P:S219G
  • P:A269V
  • P:G270E
  • P:I282T
  • P:K350R
  • P:R355K
  • P:V414A
  • P:V446M
  • P:A459V

    • V

  • V:E54K
  • V:T92A
  • V:K195R
  • V:S219G
  • V:G237S
    • Deletions
    None
    Insertions
    None

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