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Status
PPD_006R2H8.1
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Download FASTA
Download metadata TSV
Display Name: USA/PPD_006R2H8.1/2025-06-02
J. M. Garrigues &
N. M. Green
Submission details
Submission ID
PV931737.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-08-27 16:37:32 UTC
Date released
2025-08-27 16:50:55 UTC
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-08-27 16:38
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Los Angeles County Public Health Laboratories
Alignment and QC metrics
Completeness
99.91%
Length
15880
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
866
Total unknown nucs
0
Sample details
Earliest release date
2025-08-05
Collection subdivision level 1
California
Collection country
USA
Collection date
2025-06-02
Collection date (lower bound)
2025-06-02
Collection date (upper bound)
2025-06-02
Isolate name
MVs/California.USA/23.25[B3]
Genotype
Genotype
B3
Host
Host name - scientific
Homo sapiens
Host taxon ID
9606
INSDC
INSDC accession
PV931737.1
NCBI release date
2025-08-05
NCBI update date
2025-08-05
Nucleotide mutations
Mutations called relative to the
NC_001498.1
reference
Substitutions
A
50
G
T
73
C
A
92
G
T
100
C
G
122
A
A
197
C
T
224
C
T
248
C
A
260
C
T
356
C
C
383
T
C
404
A
A
413
G
T
422
C
T
443
A
A
461
G
C
470
T
C
473
T
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_001498.1
reference
Substitutions
C
C:
R
13
K
C:
Q
27
K
C:
R
38
T
C:
T
39
S
C:
E
40
D
C:
K
78
R
C:
S
88
P
C:
M
129
K
C:
G
171
E
F
F:
V
7
I
F:
I
10
V
F:
M
12
I
F:
T
22
A
F:
A
105
V
F:
Q
139
R
F:
H
419
R
F:
A
512
T
H
H:
H
17
Y
H:
A
174
T
H:
A
176
T
H:
N
178
T
H:
S
211
G
H:
V
220
I
H:
G
235
E
H:
S
240
N
H:
H
252
Y
H:
D
283
G
H:
F
284
L
H:
S
285
G
H:
F
296
L
H:
R
302
G
H:
E
303
D
H:
T
307
I
H:
R
334
Q
H:
I
346
V
Show more
L
L:
V
34
L
L:
R
77
K
L:
A
81
T
L:
E
98
R
L:
T
131
I
L:
I
149
V
L:
I
150
T
L:
K
215
R
L:
A
252
T
L:
A
271
T
L:
K
441
R
L:
R
447
K
L:
V
596
I
L:
S
616
N
L:
P
617
S
L:
R
623
K
L:
K
626
R
L:
E
628
A
Show more
M
M:
K
204
R
N
N:
S
144
F
N:
N
427
S
N:
G
431
R
N:
G
443
N
N:
Y
451
H
N:
G
455
E
N:
S
456
P
N:
A
462
V
N:
S
470
G
N:
M
471
T
N:
S
481
F
N:
G
482
S
N:
L
505
S
N:
G
509
D
P
P:
S
26
P
P:
V
29
I
P:
A
34
E
P:
Q
45
H
P:
D
46
E
P:
A
48
S
P:
E
52
K
P:
E
54
K
P:
G
74
S
P:
I
95
A
P:
R
98
G
P:
T
105
A
P:
C
109
R
P:
H
111
Y
P:
V
120
I
P:
D
136
E
P:
D
146
N
P:
K
195
R
Show more
V
V:
S
26
P
V:
V
29
I
V:
A
34
E
V:
Q
45
H
V:
D
46
E
V:
A
48
S
V:
E
52
K
V:
E
54
K
V:
G
74
S
V:
I
95
A
V:
R
98
G
V:
T
105
A
V:
C
109
R
V:
H
111
Y
V:
V
120
I
V:
D
136
E
V:
D
146
N
V:
K
195
R
Show more
Deletions
None
Insertions
None
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