This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the
example data
repository. This instance should not be used for analysis.
X
Pathoplexus
Measles Virus
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Ebola Zaire
HMPV
Measles Virus
Mpox Virus
RSV-A
RSV-B
West Nile Virus
Browse
Submit
SeqSets
News
About
Docs
Login
Pathoplexus
Browse
Submit
SeqSets
News
About
Docs
Login
API docs
Governance
Funding
Contact
Status
PPD_006R2EF.1
Download
Download FASTA
Download metadata TSV
Display Name: Netherlands/PPD_006R2EF.1/2025-04-13
C. Ma,
J. Cremer,
F. Zwagemaker,
L. van de Nes-Reijnen &
R. Bodewes
Submission details
Submission ID
PV890912.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-08-27 16:37:32 UTC
Date released
2025-08-27 16:50:55 UTC
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-08-27 16:38
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
National Institute for Public Health and the Environment RIVM, Centre for Infectious Disease Research, Diagnostics and laboratory Surveillance (IDS)
Alignment and QC metrics
Completeness
98.64%
Length
15684
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
6
Total SNPs
850
Total unknown nucs
0
Sample details
Earliest release date
2025-07-29
Collection country
Netherlands
Collection date
2025-04-13
Collection date (lower bound)
2025-04-13
Collection date (upper bound)
2025-04-13
Isolate name
MVs/Noord-Holland.NLD/15.25/2[B3]
Genotype
Genotype
B3
Host
Host name - scientific
Homo sapiens
Host taxon ID
9606
INSDC
INSDC accession
PV890912.1
NCBI release date
2025-07-29
NCBI update date
2025-07-29
Nucleotide mutations
Mutations called relative to the
NC_001498.1
reference
Substitutions
G
122
A
A
197
C
T
224
C
T
248
C
A
260
C
T
356
C
C
383
T
C
404
A
A
413
G
T
422
C
T
443
A
A
461
G
C
470
T
C
473
T
A
494
G
A
515
G
C
518
T
C
538
T
Show more
Deletions
None
Insertions
ins_4767:TCCCCC
Amino acid mutations
Mutations called relative to the
NC_001498.1
reference
Substitutions
C
C:
R
13
K
C:
Q
27
K
C:
R
38
T
C:
T
39
S
C:
E
40
D
C:
K
78
R
C:
S
88
P
C:
M
129
K
C:
G
171
E
F
F:
V
7
I
F:
I
10
V
F:
T
22
A
F:
A
105
V
F:
Q
139
R
F:
H
419
R
F:
A
512
T
H
H:
H
17
Y
H:
A
174
T
H:
A
176
T
H:
N
178
T
H:
S
211
G
H:
V
220
I
H:
G
235
E
H:
S
240
N
H:
H
252
Y
H:
D
283
G
H:
F
284
L
H:
S
285
G
H:
F
296
L
H:
R
302
G
H:
E
303
D
H:
T
307
I
H:
R
334
Q
H:
I
346
V
Show more
L
L:
V
34
L
L:
R
77
K
L:
A
81
T
L:
E
98
R
L:
T
131
I
L:
I
149
V
L:
I
150
T
L:
K
215
R
L:
A
252
T
L:
A
271
T
L:
K
441
R
L:
R
447
K
L:
V
596
I
L:
S
616
N
L:
P
617
S
L:
R
623
K
L:
K
626
R
L:
E
628
A
Show more
M
M:
K
204
R
N
N:
S
144
F
N:
N
427
S
N:
G
431
R
N:
G
443
N
N:
Y
451
H
N:
G
455
E
N:
S
456
P
N:
A
462
V
N:
H
466
Y
N:
S
470
G
N:
M
471
T
N:
S
481
F
N:
G
482
S
N:
L
505
S
N:
G
509
D
P
P:
S
26
P
P:
V
29
I
P:
A
34
E
P:
Q
45
H
P:
D
46
E
P:
A
48
S
P:
E
52
K
P:
E
54
K
P:
G
74
S
P:
I
95
A
P:
R
98
G
P:
T
105
A
P:
C
109
R
P:
H
111
Y
P:
V
120
I
P:
D
136
E
P:
D
146
N
P:
K
195
R
Show more
V
V:
S
26
P
V:
V
29
I
V:
A
34
E
V:
Q
45
H
V:
D
46
E
V:
A
48
S
V:
E
52
K
V:
E
54
K
V:
G
74
S
V:
I
95
A
V:
R
98
G
V:
T
105
A
V:
C
109
R
V:
H
111
Y
V:
V
120
I
V:
D
136
E
V:
D
146
N
V:
K
195
R
Show more
Deletions
None
Insertions
None
Load sequences
Report an issue with this sequence or metadata
Create GitHub issue