This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_0062U6J.1

Display Name: USA/PPD_0062U6J.1/2025-04-11
A. S. Lauring & L. K. Papalambros

Submission details

Submission ID
PV822324.1
Submitting group
Date submitted
2025-07-06 03:01:50 UTC
Date released
2025-07-06 03:02:00 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-06 03:01insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University Of Michigan, Internal Medicine - Infectious Disease

INSDC

BioProject accession
INSDC accession
NCBI release date
2025-07-05
NCBI update date
2025-07-05

Alignment and QC metrics

Completeness
81.32%
Length
14920
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
1
Total SNPs
192
Total unknown nucs
2540

Sample details

Earliest release date
2025-07-05
Collection country
USA
Collection date
2025-04-11
Collection date (lower bound)
2025-04-11
Collection date (upper bound)
2025-04-11
Isolate name
hRSV-A-G25Z06X4

Host

Host name - scientific
Homo sapiens
Host taxon ID

Lineage

Lineage
A.D.1.5

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • T66A
  • A67G
  • C90T
  • C183T
  • G198A
  • A321G
  • A351G
  • G925A
  • T928C
  • G1000A
  • C1012T
  • T1019C
  • T1032C
  • T1048C
  • G1049A
  • G1050A
  • C1203T
  • T1224C
    • Deletions
    4592, 7555
    Insertions
    ins_2297:A

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:T122A
  • F:V127I
  • F:K470R

    • G

  • G:P88S
  • G:H90Y
  • G:S100N
  • G:L101F
  • G:I134K
  • G:L142S
  • G:G224V
  • G:S243I
  • G:T246A
  • G:K262E
  • G:I265L
  • G:D284G
  • G:S294P
  • G:Y304H
  • G:T319I
  • G:T320A

    • L

  • L:P171L
  • L:T179S
  • L:R256K
  • L:Y598H
  • L:M1225I
  • L:L1438Q
  • L:I1653V
  • L:K1661N
  • L:N1723S
  • L:E1725G
  • L:G1731D

    • M

  • M:M43I

    • M2-1

  • M2-1:N174S
  • M2-1:S176P
  • M2-1:T180A

    • M2-2

  • M2-2:T1M
  • M2-2:Y26C
  • M2-2:S46N

    • N

  • N:V352A

    • P

  • P:L55P
  • P:N64S
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue