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PPD_0062U1U.1

Display Name: Japan/PPD_0062U1U.1/2025-06-10
K. Kuroki

Submission details

Submission ID
LC880432.1
Submitting group
Date submitted
2025-07-05 04:40:57 UTC
Date released
2025-07-05 04:41:27 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-05 04:40insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Department of Microbiology; 3-24-1 Hyakunin-cho, Shinjuku-ku, Tokyo 169-0073

Alignment and QC metrics

Completeness
5.80%
Frame shifts
G:149-155(nt:6691-6711),G:207-224(nt:6864-6918)
Length
766
Total ambiguous nucs
1
Total deleted nucs
22
Total frame shifts
2
Total inserted nucs
12
Total SNPs
325
Total unknown nucs
1

Sample details

Earliest release date
2025-07-04
Collection subdivision level 1
Tokyo
Collection country
Japan
Collection date
2025-06-10
Collection date (lower bound)
2025-06-10
Collection date (upper bound)
2025-06-10
Isolate name
hMPV_B2/G/F25-577/Tokyo/2025

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2025-07-04
NCBI update date
2025-07-04

Lineage

Lineage
B2

Nucleotide mutations

Mutations called relative to the NC_039199.1 reference

Substitutions

  • C6339T
  • T6340A
  • T6342A
  • G6346A
  • C6351T
  • A6354C
  • A6358T
  • T6363A
  • A6364G
  • C6365T
  • G6369A
  • T6375A
  • C6378A
  • C6381T
  • A6385G
  • C6387T
  • A6389T
  • C6391T
    • Deletions
    6863, 6919, 6920, 6986-6997, 7012-7016, 7030, 7031
    Insertions
    ins_6711:CA, ins_6759:GCAACC, ins_6690:A, ins_7067:GAG

    Amino acid mutations

    Mutations called relative to the NC_039199.1 reference

    Substitutions

    G

  • G:S32T
  • G:V34I
  • G:I38L
  • G:T40V
  • G:I47V
  • G:Y48F
  • G:N52D
  • G:K54A
  • G:M55K
  • G:Q56L
  • G:T59M
  • G:S60T
  • G:E61K
  • G:S62V
  • G:H64L
  • G:H65C
  • G:T66V
  • G:S67N
    • Deletions
    G:225
    Insertions
    ins_G:187:A, ins_G:137:R

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