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PPD_0062QKV.1

Display Name: USA/PPD_0062QKV.1/2025-05-14
Fox, E. B.; Garrigues, J. M.; Green, N. M.

Submission details

Submission ID
PV834994.1
Submitting group
Date submitted
2025-06-26 18:51:35 UTC
Date released
2025-06-26 18:51:48 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-06-26 18:51insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Los Angeles County Department of Public Health, Los Angeles County Public Health Laboratories

Clade & Lineage

Clade
IIb
Lineage
F.2
Outbreak
hMPXV-1

Alignment and QC metrics

Completeness
92.06%
Frame shifts
OPG019:143(nt:8004-8008)
Length
195608
Total ambiguous nucs
2
Total deleted nucs
100
Total frame shifts
1
Total inserted nucs
53
Total SNPs
92
Total stop codons
0
Total unknown nucs
14094

Sample details

Earliest release date
2025-06-26
Collection country
USA
Collection date
2025-05-14
Collection date (lower bound)
2025-05-14
Collection date (upper bound)
2025-05-14
Isolate name
Monkeypox virus/Human/USA/CA-LACPHL-MA00732/2025

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2025-06-26
NCBI update date
2025-06-26

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • G1262A
  • G2591A
  • G3111A
  • G3522A
  • C3818T
  • C7771T
  • G15428A
  • A18769G
  • C20453T
  • G21723A
  • C22167T
  • C22936T
  • C23564T
  • G25661A
  • G26533A
  • T28175C
  • G30367A
  • C30605T
    • Deletions
    8003, 179146-179244
    Insertions
    ins_173475:NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN, ins_157311:T, ins_136554:ATC, ins_132801:TNN

    Amino acid mutations

    Mutations called relative to the NC_063383.1 reference

    Substitutions

    OPG001

  • OPG001:S105L

    • OPG002

  • OPG002:S54F

    • OPG003

  • OPG003:D264N

    • OPG038

  • OPG038:G75E

    • OPG042

  • OPG042:H189Y

    • OPG047

  • OPG047:R197K

    • OPG053

  • OPG053:P78S

    • OPG056

  • OPG056:E125K

    • OPG057

  • OPG057:E353K

    • OPG062

  • OPG062:R59K

    • OPG071

  • OPG071:L108F

    • OPG072

  • OPG072:D56N

    • OPG092

  • OPG092:D196N

    • OPG093

  • OPG093:S30L
  • OPG093:E63K
  • OPG093:D88N

    • OPG094

  • OPG094:M142I

    • OPG098

  • OPG098:E162K

    • OPG105

  • OPG105:S734L

    • OPG109

  • OPG109:H740Y

    • OPG118

  • OPG118:G4E
  • OPG118:K606E

    • OPG136

  • OPG136:D98N

    • OPG138

  • OPG138:R94K

    • OPG139

  • OPG139:A17T

    • OPG145

  • OPG145:E62K
  • OPG145:R243Q
  • OPG145:E435K

    • OPG150

  • OPG150:S307L

    • OPG153

  • OPG153:M114I

    • OPG176

  • OPG176:H221Y

    • OPG188

  • OPG188:E12K

    • OPG193

  • OPG193:L263F

    • OPG198

  • OPG198:D94N

    • OPG210

  • OPG210:D209N
  • OPG210:P722S
  • OPG210:M1741I
    • Deletions
    OPG019:142
    Insertions
    ins_OPG153:385:D

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