This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_0062QE6.1

Display Name: USA/PPD_0062QE6.1/2025-06-03
Iverson, T.; Oakeson, K.; Hergert, J.

Submission details

Submission ID
PV822320.1
Submitting group
Date submitted
2025-06-25 12:54:55 UTC
Date released
2025-06-25 12:55:27 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-06-25 12:54insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Utah Public Health Laboratory, Utah Public Health Laboratory Infectious Disease Submission Group

Clade & Lineage

Clade
IIb
Lineage
F.2
Outbreak
hMPXV-1

Alignment and QC metrics

Completeness
56.92%
Length
184173
Total ambiguous nucs
12
Total deleted nucs
10
Total frame shifts
0
Total inserted nucs
0
Total SNPs
49
Total stop codons
0
Total unknown nucs
71917

Sample details

Earliest release date
2025-06-25
Collection country
USA
Collection date
2025-06-03
Collection date (lower bound)
2025-06-03
Collection date (upper bound)
2025-06-03
Isolate name
MPXV/Human/USA/UT-UPHL-7646b/2025

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2025-06-25
NCBI update date
2025-06-25

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • C7771T
  • G15428A
  • T28175C
  • G30367A
  • G31053A
  • G38360A
  • C38662T
  • C39119T
  • C39139T
  • G52885A
  • G53326A
  • G54117A
  • G54635A
  • G64297A
  • G69840A
  • C72362T
  • C73066T
  • G73239A
    • Deletions
    133177-133186
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_063383.1 reference

    Substitutions

    OPG047

  • OPG047:R48C

    • OPG056

  • OPG056:E125K

    • OPG057

  • OPG057:E353K

    • OPG071

  • OPG071:L108F

    • OPG072

  • OPG072:D56N

    • OPG092

  • OPG092:D196N

    • OPG093

  • OPG093:S30L
  • OPG093:D88N

    • OPG094

  • OPG094:M142I

    • OPG098

  • OPG098:E162K

    • OPG117

  • OPG117:E361Q

    • OPG120

  • OPG120:D151N

    • OPG132

  • OPG132:E151D

    • OPG145

  • OPG145:E62K
  • OPG145:R243Q
  • OPG145:E435K

    • OPG150

  • OPG150:S307L

    • OPG188

  • OPG188:E12K

    • OPG210

  • OPG210:P722S
  • OPG210:M1741I
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue