This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the
example data
repository. This instance should not be used for analysis.
X
Pathoplexus
RSV-A
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Ebola Zaire
HMPV
Mpox Virus
RSV-A
RSV-B
West Nile Virus
Browse
Submit
SeqSets
News
About
Docs
Login
Pathoplexus
Browse
Submit
SeqSets
News
About
Docs
Login
API docs
Governance
Contact
Status
PPD_0062K13.1
Download
Download FASTA
Download metadata TSV
Display Name: Ireland/PPD_0062K13.1/2025-04-16
Carr, M.;
Bennett, C.;
Banka, W.;
Fahey, L.;
Rice, A.;
Dean, J.;
Hare, D.;
De Gascun, C. F.
Submission details
Submission ID
OZ262291.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-06-04 05:06:13 UTC
Date released
2025-06-04 05:06:41 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-06-04 05:06
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
UCD National Virus Reference Laboratory, Dublin, Co. Dublin
INSDC
BioProject accession
PRJEB90083
BioSample accession
SAMEA118424602
INSDC accession
OZ262291.1
NCBI release date
2025-06-03
NCBI update date
2025-06-04
Alignment and QC metrics
Completeness
99.83%
Length
15198
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
0
Total SNPs
223
Total unknown nucs
0
Sample details
Earliest release date
2025-06-03
Collection country
Ireland
Collection date
2025-04-16
Collection date (lower bound)
2025-04-16
Collection date (upper bound)
2025-04-16
Host
Host name - scientific
Homo sapiens
Host taxon ID
9606
Lineage
Lineage
A.D.1
Nucleotide mutations
Mutations called relative to the
PP109421.1
reference
Substitutions
T
66
A
A
67
G
C
90
T
C
183
T
G
198
A
A
342
T
A
399
G
A
502
G
G
520
A
G
551
A
G
555
A
T
659
C
G
664
A
T
697
C
A
996
G
G
1000
A
C
1012
T
T
1035
A
Show more
Deletions
4592
Insertions
None
Amino acid mutations
Mutations called relative to the
PP109421.1
reference
Substitutions
F
F:
A
518
V
G
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
S
117
L
G:
I
134
K
G:
L
142
S
G:
G
224
E
G:
V
225
A
G:
S
243
I
G:
K
262
E
G:
I
265
L
G:
P
276
L
G:
Y
280
H
G:
D
284
G
G:
E
295
V
G:
Y
304
H
G:
E
308
K
G:
L
314
P
G:
T
320
A
L
L:
I
66
M
L:
N
143
D
L:
P
171
L
L:
T
179
S
L:
T
184
A
L:
R
256
K
L:
Y
598
H
L:
L
1438
Q
L:
I
1653
V
L:
K
1661
N
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
L:
S
1789
F
L:
Y
2163
N
M
M:
K
25
R
M:
M
43
I
M2-1
M2-1:
S
176
P
M2-2
M2-2:
Y
26
C
M2-2:
S
46
N
N
N:
V
352
A
NS1
NS1:
E
91
D
P
P:
L
55
P
SH
SH:
I
38
S
Deletions
None
Insertions
None
Load sequences
Report an issue with this sequence or metadata
Create GitHub issue