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Status
PPD_0062E42.1
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Display Name: USA/PPD_0062E42.1/2025-02-18
Paull, J.;
Messer, K.;
Adams, G.;
Nabatanzi, D.;
Dobbins, S.;
Tomkins-Tinch, C.;
Mboowa, G.;
Luebbert, L.;
Worby, C.;
Wewior, N.;
Samani, P.;
DeRuff, K.;
Blumenstiel, B.;
Moreno, G.;
Earl, A.;
Gnirke, A.;
MacInnis, B.;
Sabeti, P.;
Lemieux, J.;
Park, D.
Submission details
Submission ID
PV717815.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-06-02 18:35:21 UTC
Date released
2025-06-02 18:35:50 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2025-06-02 18:35
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Broad Institute of MIT and Harvard, Infectious Disease and Microbiome Program
INSDC
BioProject accession
PRJNA1052714
BioSample accession
SAMN48776844
INSDC accession
PV717815.1
NCBI release date
2025-06-02
NCBI update date
2025-06-02
Alignment and QC metrics
Completeness
98.84%
Frame shifts
G:235-237(nt:6947-6957)
Length
13146
Total ambiguous nucs
0
Total deleted nucs
50
Total frame shifts
1
Total inserted nucs
1
Total SNPs
1066
Total unknown nucs
0
Sample details
Earliest release date
2025-06-02
Collection subdivision level 1
Massachusetts
Collection country
USA
Collection date
2025-02-18
Collection date (lower bound)
2025-02-18
Collection date (upper bound)
2025-02-18
Isolate name
HMPV/human/USA/MA-Broad_MGH-23864/2025
Host
Host name - scientific
Homo sapiens
Host taxon ID
9606
Lineage
Lineage
A2.2.1
Nucleotide mutations
Mutations called relative to the
NC_039199.1
reference
Substitutions
T
70
C
G
81
A
T
102
A
A
117
G
G
126
A
T
129
C
T
138
A
G
144
A
A
186
G
G
195
A
A
204
G
G
208
A
C
213
T
T
259
C
A
264
G
G
276
A
G
288
A
G
291
A
Show more
Deletions
4692-4719, 6112, 6113, 6224, 6898-6909, 6940-6946
Insertions
ins_7130:G
Amino acid mutations
Mutations called relative to the
NC_039199.1
reference
Substitutions
F
F:
R
82
K
F:
A
185
D
F:
F
258
I
F:
G
294
E
F:
S
466
N
F:
T
504
S
F:
N
539
S
G
G:
T
10
A
G:
V
34
I
G:
K
54
T
G:
M
55
I
G:
N
58
T
G:
S
69
T
G:
M
71
T
G:
S
74
I
G:
R
75
K
G:
P
78
S
G:
V
80
I
G:
T
82
L
G:
D
83
Y
G:
S
85
P
G:
T
87
I
G:
S
89
P
G:
S
90
N
G:
P
91
S
Show more
L
L:
I
75
V
L:
V
79
I
L:
K
162
R
L:
V
182
I
L:
I
245
M
L:
V
331
A
L:
W
390
L
L:
T
429
N
L:
K
496
T
L:
E
540
G
L:
D
546
E
L:
V
654
I
L:
S
769
R
L:
V
772
I
L:
R
951
K
L:
R
957
K
L:
A
960
T
L:
I
1023
V
Show more
M
M:
I
23
V
M:
N
66
S
M2-1
M2-1:
V
130
I
M2-1:
E
170
D
M2-1:
T
183
I
M2-2
M2-2:
H
35
Q
M2-2:
D
37
E
M2-2:
S
49
F
M2-2:
N
55
S
N
N:
A
57
T
N:
V
92
T
N:
I
103
V
P
P:
G
31
S
P:
V
46
I
P:
A
59
T
P:
P
64
L
P:
T
78
I
P:
I
82
V
P:
A
85
T
P:
V
88
I
P:
V
214
I
P:
S
239
N
P:
S
242
T
P:
P
277
L
P:
T
280
I
P:
D
282
E
P:
S
284
N
SH
SH:
S
9
N
SH:
V
33
A
SH:
L
44
F
SH:
K
71
E
SH:
S
73
L
SH:
S
74
P
SH:
N
87
D
SH:
Q
92
H
SH:
S
96
R
SH:
N
103
D
SH:
A
105
V
SH:
S
108
K
SH:
N
115
S
SH:
S
132
L
SH:
T
135
S
SH:
K
136
E
SH:
T
137
I
SH:
N
139
S
Show more
Deletions
G:224-230, G:232-234
Insertions
None
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