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PPD_00628TV.1

Display Name: USA/PPD_00628TV.1/2025-04-23
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV640334.1
Submitting group
Date submitted
2025-05-28 12:40:04 UTC
Date released
2025-05-28 12:40:29 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-05-28 12:40insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

BioProject accession
BioSample accession
INSDC accession
Raw reads accession
NCBI release date
2025-05-21
NCBI update date
2025-05-21

Alignment and QC metrics

Completeness
98.36%
Length
15046
Total ambiguous nucs
3
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
1
Total SNPs
228
Total unknown nucs
69

Sample details

Earliest release date
2025-05-21
Collection subdivision level 1
Minnesota
Collection country
USA
Collection date
2025-04-23
Collection date (lower bound)
2025-04-23
Collection date (upper bound)
2025-04-23
Isolate name
MN-MDH-RSVA-03080

Host

Host name - scientific
Homo sapiens
Host taxon ID

Lineage

Lineage
A.D.1.5

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • A135G
  • C183T
  • G198A
  • A321G
  • A351G
  • G551A
  • C622T
  • G664A
  • T697C
  • A748G
  • T928C
  • G1000A
  • C1012T
  • T1019C
  • T1032C
  • G1045A
  • T1048C
    • Deletions
    4592, 7555
    Insertions
    ins_2299:G

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:V127I

    • G

  • G:A57T
  • G:P71L
  • G:H90Y
  • G:S100N
  • G:L101F
  • G:I134K
  • G:L142S
  • G:G224V
  • G:S243I
  • G:L247P
  • G:K262E
  • G:I265L
  • G:S270P
  • G:Y280H
  • G:D284G
  • G:S294P
  • G:Y304H
  • G:T319I
  • G:T320A

    • L

  • L:N143D
  • L:P171L
  • L:T179S
  • L:R256K
  • L:Y598H
  • L:M1225I
  • L:F1402I
  • L:L1438Q
  • L:I1653V
  • L:K1661N
  • L:I1716V
  • L:N1723S
  • L:E1725G
  • L:G1731D

    • M

  • M:M43I

    • M2-1

  • M2-1:N174S
  • M2-1:S176P
  • M2-1:T180A

    • M2-2

  • M2-2:T1M
  • M2-2:Y26C
  • M2-2:S46N

    • N

  • N:V352A

    • P

  • P:L55P
  • P:G74E
    • Deletions
    None
    Insertions
    None

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