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PPD_005RALV.1

Display Name: USA/PPD_005RALV.1/2025-03-23
H. D. Kunerth, M. Plumb, S. Namugenyi, D. Evans, L. Bohnkers-Voels & A. Strain

Sample details

Collection date
2025-03-23
Country
USA
Admin level 1
Minnesota
Isolate name
MN-MDH-RSVB-02860

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-05-22 15:57insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1.5

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-04-27
NCBI update date
2025-04-27
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15140
# of SNPs
147
# of inserted bases
4
# of deleted bases
2
# of ambiguous bases
0
# of unknown bases
387
# of frame shifts
0
Completeness
96.91%

Submission details

Submission ID
PV546196.1
Submitting group
Date submitted
2025-05-22 15:57:16 UTC
Date released
2025-05-22 16:10:10 UTC
Earliest release date
2025-04-27

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • A134G
  • T303C
  • G513T
  • G579A
  • G649A
  • A664G
  • C688T
  • G781A
  • T960C
  • C998A
  • T1033C
  • G1385A
  • G1453A
  • G1732A
  • T1846C
  • C2198T
  • T2406C
  • T2457C
    • Deletions
    973, 4586
    Insertions
    ins_15092:ATAT

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:R42K
  • F:L125P
  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:A74V
  • G:I87T
  • G:L91F
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P214S
  • G:T216I
  • G:L217P
  • G:P221L
  • G:I252T
  • G:K256N
  • G:T262A
  • G:I268T
  • G:S275P
  • G:Y285H

    • L

  • L:G146D
  • L:C195R
  • L:K570R
  • L:I1224V
  • L:K1637R
  • L:R1759K
  • L:I1773V
  • L:V1965I
  • L:T1987I
  • L:V2077I
  • L:L2162F

    • M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

    • N

  • N:V97I

    • NS2

  • NS2:I27M
    • Deletions
    None
    Insertions
    None

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