This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_004MD08.1

Display Name: Bangladesh/PPD_004MD08.1/2025-01-04
M. Talha, Y. Karim, M. S. Alam, R. Howlader, R. Rahman, S. Khair, A. Al Faisal, A. Haque, M. N. Begum & M. Rahman

Sample details

Collection date
2025-01-04
Collection date (lower bound)
2025-01-04
Collection date (upper bound)
2025-01-04
Isolate name
01_3250103002_2025_Bangladesh
Collection country
Bangladesh

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-05-22 15:49insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B2

Authors

Author affiliations
icddr, b, Virology Laboratory, Infectious Diseases Division (IDD)

INSDC

NCBI release date
2025-03-16
NCBI update date
2025-03-16
INSDC accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
409
Total SNPs
57
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
3.06%

Submission details

Submission ID
PV088195.1
Submitting group
Date submitted
2025-05-22 15:48:54 UTC
Date released
2025-05-22 16:44:19 UTC
Earliest release date
2025-03-16

Nucleotide mutations

Mutations called relative to the NC_039199.1 reference

Substitutions

  • C537T
  • A540G
  • C564A
  • G573T
  • C585T
  • C591T
  • G597A
  • T600C
  • C604A
  • T606A
  • A609G
  • A621G
  • G627A
  • A639G
  • A640G
  • G642A
  • C645T
  • C660T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_039199.1 reference

    Substitutions

    N

  • N:M201V
  • N:D212E
  • N:H220Y
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue