This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the
example data
repository. This instance should not be used for analysis.
X
Pathoplexus
HMPV
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Ebola Zaire
HMPV
Measles Virus
Mpox Virus
RSV-A
RSV-B
West Nile Virus
Browse
Submit
SeqSets
News
About
Docs
Login
Pathoplexus
Browse
Submit
SeqSets
News
About
Docs
Login
API docs
Governance
Funding
Contact
Status
PPD_004MB9S.1
Download
Download FASTA
Download metadata TSV
Display Name: USA/PPD_004MB9S.1/2024-06-25
P. C. Longley,
S. Goya,
C. Varela,
D. Y. Kim &
A. L. Greninger
Sample details
Collection date
2024-06-25
Country
USA
Admin level 1
WA
Isolate name
hMPV/371807/USA/2024
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-05-22 15:49
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Lineage
Lineage
A2.2.2
Authors
Author affiliations
University of Washington, University of Washington
INSDC
INSDC accession
PV052190.1
BioProject accession
PRJNA1027483
BioSample accession
SAMN46350524
NCBI release date
2025-02-05
NCBI update date
2025-02-05
Raw reads accession
SRR32080716
Host
Host taxon ID
9606
Host name - scientific
Homo sapiens
Alignment and QC metrics
Length
13419
# of SNPs
1080
# of inserted bases
121
# of deleted bases
49
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
1
Frame shifts
G:228-237(nt:6927-6957)
Completeness
99.98%
Submission details
Submission ID
PV052190.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-05-22 15:48:54 UTC
Date released
2025-05-22 16:44:19 UTC
Earliest release date
2025-02-05
Nucleotide mutations
Mutations called relative to the
NC_039199.1
reference
Substitutions
G
11
A
A
12
G
C
15
A
T
24
C
A
51
G
T
70
C
A
117
G
G
126
A
T
129
C
T
138
A
G
180
A
G
195
A
A
204
G
G
208
A
C
213
T
T
246
C
T
249
C
T
259
C
Show more
Deletions
4692-4719, 6224, 6907-6926
Insertions
ins_6118:A, ins_6720:AAGACACAACTCACACCACGGGCAACAACGAAGGCGGCCCCCAGAGCCATCACCCTCAGAACAAAAACAAAATCGACAGCCCACAGAAGAAACATCCCAAGCACAGTCTCC, ins_6964:A, ins_7133:T, ins_13275:AAAAAT, ins_13350:G
Amino acid mutations
Mutations called relative to the
NC_039199.1
reference
Substitutions
F
F:
R
82
K
F:
A
185
D
F:
F
258
I
F:
G
294
E
F:
S
466
N
F:
T
504
S
F:
V
510
I
F:
K
518
R
F:
N
539
S
G
G:
T
10
A
G:
K
29
R
G:
V
34
I
G:
T
40
A
G:
L
41
M
G:
K
54
T
G:
M
55
I
G:
N
58
T
G:
T
59
A
G:
S
69
P
G:
M
71
T
G:
S
74
N
G:
R
75
K
G:
P
78
S
G:
V
80
I
G:
T
82
I
G:
S
85
P
G:
T
87
I
Show more
L
L:
I
75
V
L:
S
132
G
L:
K
162
R
L:
V
182
I
L:
I
245
M
L:
W
390
L
L:
K
496
T
L:
T
505
A
L:
K
530
R
L:
K
538
R
L:
D
546
E
L:
G
760
D
L:
S
769
R
L:
S
895
T
L:
R
951
K
L:
A
960
T
L:
D
1037
E
L:
V
1107
I
Show more
M
M:
I
23
V
M:
N
66
S
M:
K
87
R
M2-1
M2-1:
V
130
I
M2-1:
E
170
D
M2-2
M2-2:
H
35
Q
M2-2:
D
37
E
N
N:
A
57
T
N:
V
92
A
N:
I
103
V
N:
H
220
Y
P
P:
G
31
S
P:
N
44
S
P:
A
59
T
P:
T
78
I
P:
K
79
R
P:
I
82
A
P:
A
85
T
P:
V
88
I
P:
V
214
I
P:
K
227
R
P:
S
239
N
P:
S
242
T
P:
T
280
L
P:
S
284
N
SH
SH:
S
9
N
SH:
V
33
A
SH:
L
44
F
SH:
S
68
P
SH:
K
71
E
SH:
S
74
P
SH:
N
87
D
SH:
S
96
R
SH:
N
103
D
SH:
A
105
V
SH:
S
108
K
SH:
N
115
S
SH:
S
132
P
SH:
T
135
S
SH:
T
137
I
SH:
N
139
S
SH:
K
142
R
SH:
P
151
S
Show more
Deletions
G:221-227
Insertions
ins_G:158:KTQLTPRATTKAAPRAITLRTKTKSTAHRRNIPSTVS
Load sequences
Report an issue with this sequence or metadata
Create GitHub issue