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PPD_004M5VR.1

Display Name: Taiwan/PPD_004M5VR.1/2024-06-24
Yang, S.-L.; Chiang, W.-f.; Wu, F.-T.

Submission details

Submission ID
PQ561207.1
Submitting group
Date submitted
2025-05-22 15:48:54 UTC
Date released
2025-05-22 16:40:46 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-05-22 15:49insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Ministry of Health and Welfare, Taiwan Centers for Disease Control

Alignment and QC metrics

Completeness
5.31%
Length
709
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
98
Total unknown nucs
0

Sample details

Earliest release date
2024-12-11
Collection country
Taiwan
Collection date
2024-06-24
Collection date (lower bound)
2024-06-24
Collection date (upper bound)
2024-06-24
Isolate name
CH2406a

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2024-12-11
NCBI update date
2024-12-11

Lineage

Lineage
B1

Nucleotide mutations

Mutations called relative to the NC_039199.1 reference

Substitutions

  • T3705A
  • A3720T
  • A3732G
  • T3744G
  • C3747A
  • A3748T
  • A3771G
  • A3807G
  • G3816A
  • C3819T
  • T3823A
  • G3828A
  • A3834G
  • T3837C
  • A3852G
  • G3864T
  • A3867G
  • C3868T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_039199.1 reference

    Substitutions

    F

  • F:N233Y
  • F:F258I
  • F:V286I
  • F:G294E
  • F:K296N
  • F:Q312K
  • F:K348R
  • F:N404P
  • F:V449I
  • F:K450R
    • Deletions
    None
    Insertions
    None

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