This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_004M5JD.1

Display Name: Taiwan/PPD_004M5JD.1/2024-05-30
Yang, S.-L.; Chiang, W.-f.; Wu, F.-T.

Submission details

Submission ID
PQ561196.1
Submitting group
Date submitted
2025-05-22 15:48:54 UTC
Date released
2025-05-22 16:40:46 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-05-22 15:49insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Ministry of Health and Welfare, Taiwan Centers for Disease Control

Alignment and QC metrics

Completeness
5.21%
Length
696
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
55
Total unknown nucs
0

Sample details

Earliest release date
2024-12-11
Collection country
Taiwan
Collection date
2024-05-30
Collection date (lower bound)
2024-05-30
Collection date (upper bound)
2024-05-30
Isolate name
TYC3005a

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2024-12-11
NCBI update date
2024-12-11

Lineage

Lineage
A2.2.2

Nucleotide mutations

Mutations called relative to the NC_039199.1 reference

Substitutions

  • G3708A
  • A3756G
  • C3778T
  • G3789A
  • A3804G
  • A3805C
  • A3807G
  • A3810G
  • A3813G
  • C3819T
  • T3823A
  • A3834G
  • T3837C
  • A3843G
  • A3867G
  • G3882C
  • C3891T
  • A3909G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_039199.1 reference

    Substitutions

    F

  • F:F258I
  • F:G294E
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue