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PPD_004ABY2.1

Display Name: Ireland/PPD_004ABY2.1/2025-02-04
Carr, M.; Fahey, L.; Dean, J.; Hare, D.; De Gascun, C. F.

Submission details

Submission ID
OZ257116.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-05-14 04:50:57 UTC
Date released
2025-05-14 04:51:28 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-05-14 04:50insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
National Viral Reference Laboratory, University College Dublin, Ireland, Dublin, Co. Dublin

INSDC

Bioproject accession
PRJEB89353
Biosample accession
SAMEA118256180
INSDC accession
OZ257116.1
NCBI release date
2025-05-08
NCBI update date
2025-05-10

Clade & Lineage

Clade
IIb
Lineage
F.4
Outbreak
hMPXV-1

Alignment and QC metrics

Completeness
96.46%
Length
197171
Total ambiguous nucs
0
Total deleted nucs
38
Total frame shifts
0
Total inserted nucs
0
Total SNPs
79
Total stop codons
0
Total unknown nucs
6990

Sample details

Earliest release date
2025-05-08
Collection country
Ireland
Collection date
2025-02-04
Collection date (lower bound)
2025-02-04
Collection date (upper bound)
2025-02-04

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • G1262A
  • G3111A
  • G3522A
  • C3818T
  • C7771T
  • G7862A
  • G14000T
  • G14118A
  • G15428A
  • A18769G
  • C20453T
  • G21394A
  • G21723A
  • C23564T
  • G25661A
  • T28175C
  • G30367A
  • G31053A
    • Deletions
    22197-22199, 133177-133186, 150586-150602, 196610-196617
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_063383.1 reference

    Substitutions

    OPG001

  • OPG001:S105L

    • OPG003

  • OPG003:D264N

    • OPG019

  • OPG019:D95N

    • OPG025

  • OPG025:H384Y
  • OPG025:A423D

    • OPG037

  • OPG037:S347F

    • OPG047

  • OPG047:R48C

    • OPG053

  • OPG053:P78S

    • OPG056

  • OPG056:E125K

    • OPG057

  • OPG057:E353K

    • OPG071

  • OPG071:L108F

    • OPG072

  • OPG072:D56N

    • OPG092

  • OPG092:D196N

    • OPG093

  • OPG093:S30L
  • OPG093:D88N

    • OPG094

  • OPG094:M142I

    • OPG098

  • OPG098:E162K

    • OPG109

  • OPG109:H740Y

    • OPG113

  • OPG113:H218Y

    • OPG118

  • OPG118:K606E

    • OPG136

  • OPG136:D98N

    • OPG139

  • OPG139:A17T

    • OPG145

  • OPG145:E62K
  • OPG145:E435K

    • OPG148

  • OPG148:G312S

    • OPG150

  • OPG150:S307L

    • OPG175

  • OPG175:S29L

    • OPG176

  • OPG176:H221Y

    • OPG193

  • OPG193:L263F

    • OPG209

  • OPG209:S30L

    • OPG210

  • OPG210:D209N
  • OPG210:P722S
  • OPG210:M1741I
    • Deletions
    OPG037:81
    Insertions
    None

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