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PPD_0049QFS.1

Display Name: USA/PPD_0049QFS.1/2025-02-15
Green, S.; Kunstman, K.; Barbian, H.; Araujo Perez, F.; Kittner, A.; Bobrovska, S.; Newcomer, E.

Submission details

Submission ID
PV584375.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-05-01 03:22:13 UTC
Date released
2025-05-01 03:22:29 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-05-01 03:22insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Rush University Medical Center, Regional Innovative Public Health Laboratory (RIPHL)

Clade & Lineage

Clade
IIb
Lineage
A.2.2
Outbreak
hMPXV-1

Alignment and QC metrics

Completeness
99.03%
Frame shifts
OPG174:290-347(nt:148355-148528)
Length
196220
Total ambiguous nucs
0
Total deleted nucs
129
Total frame shifts
1
Total inserted nucs
40
Total SNPs
72
Total stop codons
0
Total unknown nucs
1004

Sample details

Earliest release date
2025-04-30
Collection subdivision level 1
IL, Chicago
Collection country
USA
Collection date
2025-02-15
Collection date (lower bound)
2025-02-15
Collection date (upper bound)
2025-02-15
Isolate name
hMpxV/USA/IL-RIPHL-MPXV-050-0217/2025

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
PV584375.1
NCBI release date
2025-04-30
NCBI update date
2025-04-30

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • G4969A
  • G8560A
  • C10173T
  • C11880T
  • G11948A
  • C13298T
  • C14790T
  • A18769G
  • C18792T
  • G19676A
  • G20913A
  • C21359T
  • G21991A
  • G23118A
  • G28139A
  • T28175C
  • C30137T
  • C30636T
    • Deletions
    606-609, 8055, 136549-136554, 148529-148535, 163207-163214, 179145-179243, 196614-196617
    Insertions
    ins_173298:NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATA, ins_170904:T, ins_133102:TTT

    Amino acid mutations

    Mutations called relative to the NC_063383.1 reference

    Substitutions

    OPG021

  • OPG021:S196L

    • OPG023

  • OPG023:S318F
  • OPG023:D341N

    • OPG025

  • OPG025:D160N

    • OPG031

  • OPG031:D13N

    • OPG036

  • OPG036:S51F

    • OPG037

  • OPG037:S148L
  • OPG037:V359I

    • OPG044

  • OPG044:D17N

    • OPG047

  • OPG047:E176K
  • OPG047:D187N
  • OPG047:R353K

    • OPG049

  • OPG049:S95L
  • OPG049:D208N

    • OPG053

  • OPG053:G38E

    • OPG060

  • OPG060:S107L

    • OPG083

  • OPG083:R341K

    • OPG095

  • OPG095:A59V

    • OPG098

  • OPG098:E162K

    • OPG113

  • OPG113:V528I
  • OPG113:E553K

    • OPG118

  • OPG118:H104Y
  • OPG118:K606E

    • OPG122

  • OPG122:H198Y

    • OPG132

  • OPG132:M357I

    • OPG133

  • OPG133:S616F

    • OPG145

  • OPG145:D29N

    • OPG150

  • OPG150:S43L

    • OPG174

  • OPG174:G11R
  • OPG174:S44L

    • OPG176

  • OPG176:Q22*

    • OPG180

  • OPG180:D442N

    • OPG185

  • OPG185:D68N

    • OPG188

  • OPG188:H120Y

    • OPG190

  • OPG190:P221S

    • OPG204

  • OPG204:E314K

    • OPG205

  • OPG205:R689C

    • OPG210

  • OPG210:D159N
  • OPG210:D1245N
  • OPG210:D1877N
    • Deletions
    OPG153:384, OPG153:385, OPG174:288, OPG174:289
    Insertions
    None

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