This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_0049L0S.1

Display Name: Tajikistan/PPD_0049L0S.1/2023-05-23
D'Addiego, J.; Mullojanova, M.; Hikmatov, T.; Tishkova, F.; Hewson, R.

Submission details

Submission ID
PV390620.1.M/PV390613.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-06 02:59:30 UTC
Date released
2025-04-06 03:00:03 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-04-06 02:59insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
UK Health Security Agency, Research & Evaluation

Alignment and QC metrics M

Completeness M
37.42%
Length M
3673
Total ambiguous nucs M
17
Total deleted nucs M
0
Total frame shifts M
0
Total inserted nucs M
1
Total SNPs M
330
Total unknown nucs M
1647

Alignment and QC metrics S

Completeness S
54.84%
Length S
919
Total ambiguous nucs S
1
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
112
Total unknown nucs S
1

Sample details

Earliest release date
2025-04-05
Collection country
Tajikistan
Collection date
2023-05-23
Collection date (lower bound)
2023-05-23
Collection date (upper bound)
2023-05-23
Isolate name
CCHFV_23_178

Host

Host name scientific
Hyalomma anatolicum
Host taxon id
176092

INSDC

INSDC accession M
PV390620.1
INSDC accession S
PV390613.1
NCBI release date
2025-04-05

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • M:A1662G
  • M:T1667C
  • M:A1679G
  • M:A1682G
  • M:A1688G
  • M:A1694G
  • M:A1709G
  • M:G1712A
  • M:C1715T
  • M:G1719A
  • M:C1721T
  • M:C1724T
  • M:C1736T
  • M:G1739A
  • M:C1760T
  • M:C1766T
  • M:A1773G
  • M:A1778G

    • S

  • S:G429A
  • S:A439G
  • S:C445T
  • S:T446C
  • S:G448C
  • S:A460G
  • S:C478T
  • S:C484A
  • S:C487T
  • S:A490G
  • S:T496C
  • S:C497T
  • S:G499A
  • S:A503C
  • S:C505T
  • S:A508G
  • S:C514T
  • S:G538A
    • Deletions
    None
    Insertions
    ins_M:5171:C

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:S524G
  • GPC:G543S
  • GPC:I561V
  • GPC:R579K
  • GPC:N592S
  • GPC:V598T
  • GPC:Y606F
  • GPC:R609K
  • GPC:T633S
  • GPC:K669N
  • GPC:A710V
  • GPC:I717V
  • GPC:R724K
  • GPC:L725F
  • GPC:I778M
  • GPC:V787I
  • GPC:T1369S
  • GPC:S1380A

    • NP

  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:V205I
  • NP:L235F
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:S301G
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue