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PPD_0049DUA.1

Display Name: Slovakia/PPD_0049DUA.1/2025-01-13
Sladecek, T.

Submission details

Submission ID
OZ246959.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-30 04:41:46 UTC
Date released
2025-03-30 04:42:05 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-30 04:41insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Science Park of Comenius University of Bratislava, Ilkovicova 8, 841 04 Bratislava

INSDC

Bioproject accession
PRJEB72255
Biosample accession
SAMEA117930789
INSDC accession
OZ246959.1
Raw reads accession
ERR14789758
NCBI release date
2025-03-29
NCBI update date
2025-03-30

Clade & Lineage

Clade
IIb
Lineage
F.1
Outbreak
hMPXV-1

Alignment and QC metrics

Completeness
94.04%
Length
192382
Total ambiguous nucs
0
Total deleted nucs
112
Total frame shifts
0
Total inserted nucs
11
Total SNPs
75
Total stop codons
0
Total unknown nucs
7037

Sample details

Earliest release date
2025-03-29
Collection country
Slovakia
Collection date
2025-01-13
Collection date (lower bound)
2025-01-13
Collection date (upper bound)
2025-01-13
Isolate name
RNA

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • C7771T
  • G11668A
  • C13171T
  • G14000T
  • G15428A
  • G16748A
  • G16767A
  • A18769G
  • C20453T
  • G21723A
  • C23564T
  • G25661A
  • T28175C
  • G30367A
  • G31053A
  • C33076T
  • G34459A
  • G35132A
    • Deletions
    133177-133186, 136552-136554, 179145-179243
    Insertions
    ins_173317:ATAT, ins_0:NN, ins_133102:TTTTT

    Amino acid mutations

    Mutations called relative to the NC_063383.1 reference

    Substitutions

    OPG024

  • OPG024:D20N

    • OPG025

  • OPG025:A423D

    • OPG029

  • OPG029:R108C

    • OPG047

  • OPG047:R48C

    • OPG049

  • OPG049:D26N

    • OPG053

  • OPG053:P78S

    • OPG056

  • OPG056:E125K

    • OPG057

  • OPG057:E353K

    • OPG071

  • OPG071:L108F

    • OPG072

  • OPG072:D56N

    • OPG092

  • OPG092:D196N

    • OPG093

  • OPG093:S30L
  • OPG093:D88N

    • OPG094

  • OPG094:M142I

    • OPG098

  • OPG098:E162K

    • OPG105

  • OPG105:S734L

    • OPG109

  • OPG109:H740Y

    • OPG117

  • OPG117:S297L

    • OPG118

  • OPG118:K606E

    • OPG136

  • OPG136:D98N

    • OPG139

  • OPG139:A17T

    • OPG145

  • OPG145:E62K
  • OPG145:R243Q
  • OPG145:E435K

    • OPG150

  • OPG150:S307L

    • OPG176

  • OPG176:H221Y

    • OPG185

  • OPG185:T219I

    • OPG193

  • OPG193:L263F

    • OPG210

  • OPG210:D209N
  • OPG210:P722S
  • OPG210:M1741I
    • Deletions
    OPG153:385
    Insertions
    None

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