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PPD_0048N0S.1

Display Name: Poland/PPD_0048N0S.1/2024-08-01
Niczyporuk, J. S. Jr.

Submission details

Submission ID
PV020683.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-02-11 03:23:39 UTC
Date released
2025-02-11 03:23:45 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-02-11 03:23insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
National Veterinary Research Institute, Department of Poultry Diseases

Alignment and QC metrics

Completeness
3.91%
Length
418
Total ambiguous nucs
2
Total deleted nucs
15
Total frame shifts
0
Total inserted nucs
0
Total SNPs
44
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2025-02-10
Collection country
Poland
Collection date
2024-08
Collection date (lower bound)
2024-08-01
Collection date (upper bound)
2024-08-31
Isolate name
P/24/08-7

Host

Host name scientific
Corvus cornix
Host taxon id
181096

INSDC

INSDC accession
PV020683.1
NCBI release date
2025-02-10
NCBI update date
2025-02-10

Lineage

Lineage
2

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C10553T
  • T10555G
  • G10558T
  • A10584C
  • C10591T
  • A10596G
  • T10605C
  • A10643G
  • T10646C
  • G10648T
  • A10651G
  • T10653C
  • A10658G
  • A10664G
  • G10676A
  • A10679C
  • C10680T
  • G10681A
    • Deletions
    10547-10550, 10561-10567, 10576, 10592, 10904, 10921
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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