This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the
example data
repository. This instance should not be used for analysis.
X
Pathoplexus
West Nile Virus
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Ebola Zaire
Mpox Virus
West Nile Virus
Browse
Submit
SeqSets
News
About
Docs
Login
Loculus
Browse
Submit
SeqSets
News
About
Docs
Login
API docs
Governance
Contact
Status
PPD_0047UR5.1
Download
Download FASTA
Download metadata TSV
Display Name: France/PPD_0047UR5.1/2023-08-03
L'Ambert,
G.; Gomez,
N.; Ramiara,
K.; Migne,
C.; Touzet,
T.; Zientara,
S.; Gonzalez,
G.; Duvignaud,
A.; Malvy,
D.; de Lamballerie,
X.; Klitting,
R.; Piorkowski,
G.; Amaral,
R.; Canivez,
T.; Gueulen,
M.; Pezzi,
L.; Ayhan,
N.; Durand,
G.; Grard,
G.; Fontaine,
A.; Bigeart,
C.
Submission details
Submission ID
PP482818.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-24 03:34:31 UTC
Date released
2024-12-24 03:35:05 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-24 03:34
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Unite des Virus Emergents, Centre National de Reference des Arbovirus
Alignment states and QC metrics
Completeness
96.11%
Frame shifts
NS4B:31-33(nt:7006-7014)
Length
10660
Total ambiguous nucs
0
Total deleted nucs
15
Total frame shifts
1
Total inserted nucs
38
Total SNPs
2199
Total stop codons
0
Total unknown nucs
37
Sample details
Collection subdivision level 1
Nouvelle-Aquitaine
Collection country
France
Collection date
2023-08-03
Collection date (lower bound)
2023-08-03
Collection date (upper bound)
2023-08-03
Isolate name
Cx12-batch1_P0C_Zen-Pets-Pres_2023-08-03
Host
Host name scientific
Culicidae
Host taxon id
7157
INSDC
INSDC accession
PP482818.1
NCBI release date
2024-12-23
NCBI update date
2024-12-23
Lineage
Lineage
2
Nucleotide mutations
Substitutions
G
126
A
G
128
A
A
156
T
T
167
G
G
168
A
T
180
A
T
199
C
C
204
T
C
210
T
C
216
G
G
219
A
G
222
C
A
231
T
T
234
C
C
246
T
G
261
A
A
267
T
T
273
C
Show more
Deletions
6994-6996, 10467-10470, 10486-10493
Insertions
ins_10408:TGTATTGAGT, ins_10452:AGA, ins_7014:G, ins_10417:GTTGTAGTGTTTA, ins_7005:GTTGA, ins_10461:AG, ins_10503:CTGG
Amino acid mutations
Substitutions
2K
2K:
M
15
L
NS1
NS1:
S
9
G
NS1:
Y
34
F
NS1:
K
44
R
NS1:
K
51
A
NS1:
V
71
I
NS1:
K
92
N
NS1:
E
94
N
NS1:
S
99
A
NS1:
T
105
A
NS1:
I
113
M
NS1:
L
123
I
NS1:
V
135
I
NS1:
K
141
E
NS1:
Q
146
A
NS1:
L
153
M
NS1:
K
170
R
NS1:
V
171
I
NS1:
S
174
T
Show more
NS2A
NS2A:
M
34
I
NS2A:
L
38
M
NS2A:
I
39
L
NS2A:
S
68
A
NS2A:
M
90
L
NS2A:
N
104
S
NS2A:
V
112
A
NS2A:
H
119
Y
NS2A:
R
122
K
NS2A:
Q
123
N
NS2A:
I
124
V
NS2A:
L
126
S
NS2A:
I
129
V
NS2A:
A
137
S
NS2A:
T
147
S
NS2A:
T
150
N
NS2A:
R
167
K
NS2A:
I
183
V
Show more
NS2B
NS2B:
A
41
V
NS2B:
S
61
T
NS2B:
M
88
I
NS2B:
V
103
A
NS2B:
V
120
I
NS3
NS3:
K
11
R
NS3:
Q
92
H
NS3:
F
130
Y
NS3:
D
172
E
NS3:
I
175
A
NS3:
R
203
K
NS3:
R
215
K
NS3:
A
233
S
NS3:
P
249
H
NS3:
N
253
S
NS3:
V
283
I
NS3:
S
302
A
NS3:
S
331
A
NS3:
L
336
M
NS3:
S
347
T
NS3:
T
356
V
NS3:
V
384
I
NS3:
T
436
E
Show more
NS4A
NS4A:
I
6
V
NS4A:
K
11
R
NS4A:
T
64
S
NS4A:
M
65
L
NS4A:
A
85
V
NS4A:
V
86
I
NS4A:
V
89
A
NS4B
NS4B:
S
11
N
NS4B:
F
17
L
NS4B:
Q
19
H
NS4B:
R
20
K
NS4B:
I
21
P
NS4B:
T
116
A
NS4B:
I
168
V
NS4B:
L
183
M
NS4B:
K
193
R
NS4B:
I
202
T
NS5
NS5:
Q
18
H
NS5:
I
33
T
NS5:
K
45
R
NS5:
V
49
I
NS5:
I
78
V
NS5:
R
101
K
NS5:
C
139
A
NS5:
C
140
S
NS5:
I
162
V
NS5:
R
177
K
NS5:
V
181
I
NS5:
K
190
R
NS5:
L
197
T
NS5:
R
224
H
NS5:
V
229
I
NS5:
R
247
K
NS5:
Y
254
F
NS5:
R
287
K
Show more
capsid
capsid:
S
11
N
capsid:
V
24
G
capsid:
S
100
T
capsid:
K
108
T
capsid:
T
109
A
capsid:
I
111
F
capsid:
A
112
T
capsid:
V
113
I
capsid:
M
114
L
capsid:
I
115
L
capsid:
S
120
C
capsid:
V
121
A
env
env:
E
55
D
env:
T
64
S
env:
K
71
R
env:
D
83
E
env:
R
93
K
env:
S
122
T
env:
I
126
T
env:
R
128
W
env:
T
129
I
env:
L
131
Q
env:
V
159
A
env:
L
167
F
env:
A
172
S
env:
N
199
S
env:
T
205
S
env:
T
208
A
env:
T
210
S
env:
V
232
T
Show more
prM
prM:
M
44
L
prM:
D
46
E
prM:
S
57
A
prM:
A
73
S
prM:
M
112
L
prM:
V
156
A
prM:
V
157
I
Deletions
NS4B:28-30
Insertions
ins_NS4B:22:TRETTLG
Load sequences