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PPD_0047F3V.1

Display Name: USA/PPD_0047F3V.1/2024-09-12
Green, S.; Kunstman, K.; Barbian, H.; Araujo Perez, F.; Kittner, A.; Bobrovska, S.; Newcomer, E.

Submission details

Submission ID
PQ583327.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-09 19:13:47 UTC
Date released
2024-12-09 19:28:57 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-09 19:14insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Rush University Medical Center, Regional Innovative Public Health Laboratory (RIPHL)

INSDC

Bioproject accession
PRJNA900277
INSDC accession
PQ583327.1
NCBI release date
2024-11-12
NCBI update date
2024-11-12

Clade & Lineage

Clade
IIb
Lineage
F.4
Outbreak
hMPXV-1

Alignment states and QC metrics

Completeness
99.11%
Length
195591
Total ambiguous nucs
0
Total deleted nucs
109
Total frame shifts
0
Total inserted nucs
39
Total SNPs
89
Total stop codons
0
Total unknown nucs
207

Sample details

Collection subdivision level 1
IL, Chicago
Collection country
USA
Collection date
2024-09-12
Collection date (lower bound)
2024-09-12
Collection date (upper bound)
2024-09-12
Isolate name
hMpxV/USA/IL-RIPHL-050-0209/2024

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Nucleotide mutations

Substitutions

  • G1262A
  • G2591A
  • G3111A
  • G3522A
  • C3818T
  • C7771T
  • G14000T
  • G15428A
  • A18769G
  • C20453T
  • G21723A
  • C23564T
  • G25661A
  • T28175C
  • G30367A
  • G31053A
  • C33103T
  • C34277T
    • Deletions
    133177-133186, 179145-179243
    Insertions
    ins_173299:NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATAT, ins_133102:TTT

    Amino acid mutations

    Substitutions

    OPG001

  • OPG001:S105L

    • OPG002

  • OPG002:S54F

    • OPG003

  • OPG003:D264N

    • OPG025

  • OPG025:A423D

    • OPG047

  • OPG047:R48C

    • OPG049

  • OPG049:E17K

    • OPG053

  • OPG053:P78S

    • OPG056

  • OPG056:E125K

    • OPG057

  • OPG057:E353K

    • OPG071

  • OPG071:L108F

    • OPG072

  • OPG072:D56N

    • OPG092

  • OPG092:R24K
  • OPG092:D196N

    • OPG093

  • OPG093:S30L
  • OPG093:D88N

    • OPG094

  • OPG094:M142I

    • OPG098

  • OPG098:E162K

    • OPG105

  • OPG105:S734L

    • OPG109

  • OPG109:H740Y

    • OPG113

  • OPG113:H218Y

    • OPG118

  • OPG118:K606E

    • OPG136

  • OPG136:D98N

    • OPG139

  • OPG139:A17T

    • OPG145

  • OPG145:E62K
  • OPG145:R243Q
  • OPG145:E435K

    • OPG148

  • OPG148:G312S

    • OPG150

  • OPG150:S307L

    • OPG175

  • OPG175:S29L

    • OPG176

  • OPG176:H221Y

    • OPG185

  • OPG185:G27S

    • OPG193

  • OPG193:L263F

    • OPG205

  • OPG205:D330N

    • OPG210

  • OPG210:D209N
  • OPG210:P722S
  • OPG210:M1741I
    • Deletions
    None
    Insertions
    None