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Status
PPD_0047DE9.1
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Display Name: USA/PPD_0047DE9.1/2024-09-25
Fox,
E. B.; Garrigues,
J. M.; Green,
N. M.
Submission details
Submission ID
PQ479555.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-09 19:13:47 UTC
Date released
2024-12-09 19:28:57 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-09 19:14
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Los Angeles County Department of Public Health, Los Angeles County Public Health Laboratories
Clade & Lineage
Clade
IIb
Lineage
F.2
Outbreak
hMPXV-1
Alignment states and QC metrics
Completeness
98.04%
Length
195367
Total ambiguous nucs
2
Total deleted nucs
112
Total frame shifts
0
Total inserted nucs
54
Total SNPs
81
Total stop codons
0
Total unknown nucs
2089
Sample details
Collection country
USA
Collection date
2024-09-25
Collection date (lower bound)
2024-09-25
Collection date (upper bound)
2024-09-25
Isolate name
Monkeypox virus/Human/USA/CA-LACPHL-MA00698/2024
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PQ479555.1
NCBI release date
2024-10-18
NCBI update date
2024-10-18
Nucleotide mutations
Substitutions
G
2591
A
G
3111
A
G
3522
A
C
3818
T
C
7771
T
G
13264
A
G
14000
T
G
15428
A
A
18769
G
C
20453
T
G
21723
A
C
22167
T
C
23564
T
G
25661
A
T
28175
C
G
30367
A
G
31053
A
G
34459
A
Show more
Deletions
834-836, 133177-133186, 179145-179243
Insertions
ins_132967:CT, ins_133281:GC, ins_133106:NNN, ins_150584:N, ins_173301:NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Amino acid mutations
Substitutions
OPG002
OPG002:
S
54
F
OPG003
OPG003:
D
264
N
OPG025
OPG025:
A
423
D
OPG047
OPG047:
R
48
C
OPG053
OPG053:
P
78
S
OPG056
OPG056:
E
125
K
OPG057
OPG057:
E
353
K
OPG068
OPG068:
D
370
N
OPG071
OPG071:
L
108
F
OPG072
OPG072:
D
56
N
OPG092
OPG092:
D
196
N
OPG093
OPG093:
S
30
L
OPG093:
D
88
N
OPG094
OPG094:
M
142
I
OPG098
OPG098:
E
162
K
OPG105
OPG105:
S
734
L
OPG109
OPG109:
H
740
Y
OPG118
OPG118:
K
606
E
OPG136
OPG136:
D
98
N
OPG139
OPG139:
A
17
T
OPG145
OPG145:
E
62
K
OPG145:
R
243
Q
OPG145:
E
435
K
OPG150
OPG150:
S
307
L
OPG176
OPG176:
H
221
Y
OPG188
OPG188:
E
12
K
OPG193
OPG193:
L
263
F
OPG204
OPG204:
E
324
K
OPG210
OPG210:
D
209
N
OPG210:
P
722
S
OPG210:
M
1741
I
Deletions
None
Insertions
None
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