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PPD_003CQZJ.1

Display Name: Democratic_Republic_of_the_Congo/PPD_003CQZJ.1/2020-07-18
Kinganda-Lusamaki, E.; Whitmer, S.; Lokilo-Lofiko, E.; Amuri-Aziza, A.; Muyembe-Mawete, F.; Makangara-Cigolo, J. C.; Makaya, G.; Mbuyi, F.; Whitesell, A.; Kallay, R.; Choi, M.; Pratt, C.; Mukadi-Bamuleka, D.; Kavunga-Membo, H.; Matondo-Kuamfumu, M.; Mambu-Mbika, F.; Ekila-Ifinji, R.; Shoemaker, T.; Stewart, M.; Eng, J.; Rajan, A.; Soke, G. N.; Fonjungo, P. N.; Otshudiema, ..., P.

Submission details

Submission ID
OR084886.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-19 16:26:04 UTC
Date released
2024-11-19 16:35:35 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-19 16:26insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Alignment states and QC metrics

Completeness
89.72%
Length
18220
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
230
Total unknown nucs
1210

Sample details

Collection country
Democratic Republic of the Congo
Collection date
2020-07-18
Isolate name
Ebolavirus/H.sapiens-wt/COD/2020/Mbandaka-RDCEQT002127

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
OR084886.1
NCBI release date
2024-03-11
NCBI update date
2024-03-11

Nucleotide mutations

Substitutions

  • C856T
  • C1094T
  • T1156C
  • C1198T
  • G1420A
  • T1540C
  • A1687G
  • T1916C
  • C1945T
  • G1996A
  • T2019C
  • T2049C
  • T2068C
  • A2075G
  • G2087A
  • G2095T
  • C2139T
  • T2164C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    GP

  • GP:V310A
  • GP:G314R
  • GP:S377P
  • GP:L378P
  • GP:A417T
  • GP:S422P
  • GP:P430L
  • GP:S440G
  • GP:F443L
  • GP:S475G
  • GP:S476G
  • GP:I544T

    • L

  • L:V79I
  • L:E130D
  • L:P342S
  • L:I1034T
  • L:I1183L
  • L:S1383N
  • L:R1405Q
  • L:A1517V
  • L:S1720C
  • L:F1742S
  • L:S1747T
  • L:D1888N

    • NP

  • NP:I517T
  • NP:I527T
  • NP:T536A
  • NP:A540T
  • NP:T557I
  • NP:S644P

    • VP24

  • VP24:M212K

    • VP35

  • VP35:D18N
  • VP35:N204D

    • VP40

  • VP40:A202V
    • Deletions
    None
    Insertions
    None