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PPD_003CPAY.1

Display Name: Guinea/PPD_003CPAY.1/2021-01-01
Keita, A. K.; Koundouno, F. R.; Faye, M.; Dux, A.; Hinzmann, J.; Diallo, H.; Ayouba, A.; Le Marcis, F.; Soropogui, B.; Ifono, K.; Diagne, M. M.; Sow, M. S.; Bore, J. A.; Calvignac-Spencer, S.; Vidal, N.; Camara, J.; Keita, M. B.; Renevey, A.; Diallo, A.; Soumah, A. K.; Millimono, S. L.; Mari-Saez, A.; Diop, M.; Dore, ..., K.

Submission details

Submission ID
MZ605320.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-19 16:26:04 UTC
Date released
2024-11-19 16:35:35 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-19 16:26insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Institut Pasteur de Dakar, Virology Department

Alignment states and QC metrics

Completeness
98.71%
Length
18830
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
573
Total unknown nucs
115

Sample details

Collection subdivision level 1
Nzerekore
Collection country
Guinea
Collection date
2021-01-01

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
MZ605320.1
NCBI release date
2021-09-08
NCBI update date
2021-10-01

Nucleotide mutations

Substitutions

  • C127T
  • C149T
  • A155C
  • A182G
  • A187G
  • C230T
  • T236C
  • A257G
  • C261T
  • G263A
  • A295C
  • C356T
  • G360A
  • T369C
  • T377C
  • T378C
  • G381A
  • T385C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    GP

  • GP:A82V
  • GP:T262A
  • GP:V310A
  • GP:A315P
  • GP:G331E
  • GP:T336N
  • GP:E359K
  • GP:S377P
  • GP:L378P
  • GP:P382T
  • GP:E405G
  • GP:T411A
  • GP:S422P
  • GP:P430L
  • GP:T441A
  • GP:F443S
  • GP:P446L
  • GP:H455Y
  • GP:A503V
  • GP:I544T

    • L

  • L:V79I
  • L:E130D
  • L:F150L
  • L:M197L
  • L:A215T
  • L:I259V
  • L:M337I
  • L:Q346H
  • L:D692N
  • L:D759G
  • L:L888S
  • L:F1142V
  • L:S1383N
  • L:R1405Q
  • L:Y1594H
  • L:Q1607H
  • L:S1615N
  • L:S1645N

    • NP

  • NP:I8V
  • NP:A11T
  • NP:R111C
  • NP:K128R
  • NP:S465G
  • NP:N478S
  • NP:I517T
  • NP:R525T
  • NP:I527T
  • NP:P531T
  • NP:H534R
  • NP:T631I
  • NP:Q637R
  • NP:S644P
  • NP:E708D
  • NP:K728R

    • VP24

  • VP24:M212K

    • VP35

  • VP35:A12V
  • VP35:S41N
  • VP35:T68M
  • VP35:N204D

    • VP40

  • VP40:V20A
  • VP40:I324V

    • sGP

  • sGP:A82V
  • sGP:T262A
  • sGP:E314D
  • sGP:G331R
  • sGP:L336M

    • ssGP

  • ssGP:A82V
  • ssGP:T262A
    • Deletions
    None
    Insertions
    None