This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_003CNWS.1

Display Name: Guinea/PPD_003CNWS.1/2021-02-12
Keita, A. K.; Koundouno, F. R.; Faye, M.; Dux, A.; Hinzmann, J.; Diallo, H.; Ayouba, A.; Le Marcis, F.; Soropogui, B.; Ifono, K.; Diagne, M. M.; Sow, M. S.; Bore, J. A.; Calvignac-Spencer, S.; Vidal, N.; Camara, J.; Keita, M. B.; Renevey, A.; Diallo, A.; Soumah, A. K.; Millimono, S. L.; Mari-Saez, A.; Diop, M.; Dore, ..., S.

Submission details

Submission ID
MZ424849.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-19 16:26:04 UTC
Date released
2024-11-19 16:35:35 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-19 16:26insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Bernhard Nocht Institute for Tropical Medicine, Virology dpt.

Alignment states and QC metrics

Completeness
67.74%
Length
17594
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
349
Total unknown nucs
4752

Sample details

Collection subdivision level 1
Nzerekore
Collection country
Guinea
Collection date
2021-02-12
Isolate name
Ebola virus/H.sapiens-wt/GIN/2021/Makona-G0002

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
MZ424849.1
NCBI release date
2021-06-28
NCBI update date
2021-10-01

Nucleotide mutations

Substitutions

  • A619G
  • A655T
  • G721A
  • C800T
  • A850G
  • A852G
  • A895G
  • T919C
  • C1094T
  • C1108T
  • G1141A
  • C1198T
  • T1199C
  • T1309C
  • A1417G
  • A1447C
  • T1456C
  • A1495G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    GP

  • GP:A82V
  • GP:T262A
  • GP:V310A
  • GP:A315P
  • GP:G331E
  • GP:T336N
  • GP:E359K
  • GP:S377P
  • GP:L378P
  • GP:P382T
  • GP:E405G
  • GP:T411A
  • GP:S422P
  • GP:P430L
  • GP:T441A
  • GP:F443S
  • GP:P446L
  • GP:H455Y

    • L

  • L:E130D
  • L:F150L
  • L:M197L
  • L:A215T
  • L:I259V
  • L:M337I
  • L:Q346H
  • L:L888S
  • L:F1142V
  • L:I1240T
  • L:Y1594H
  • L:Q1607H
  • L:S1615N
  • L:S1645N
  • L:Y1654D
  • L:A1656T
  • L:D1658N
  • L:F1742S

    • NP

  • NP:R111C
  • NP:K128R
  • NP:S465G
  • NP:N478S
  • NP:I517T
  • NP:R525T
  • NP:I527T
  • NP:P531T
  • NP:H534R
  • NP:T631I
  • NP:Q637R
  • NP:S644P
  • NP:E708D
  • NP:K728R

    • VP35

  • VP35:A12V
  • VP35:S41N
  • VP35:T68M
  • VP35:N204D

    • sGP

  • sGP:A82V
  • sGP:T262A
  • sGP:E314D
  • sGP:G331R
  • sGP:L336M

    • ssGP

  • ssGP:A82V
  • ssGP:T262A
    • Deletions
    None
    Insertions
    None