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Status
PPD_003CNVU.1
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Download FASTA
Download metadata TSV
Display Name: Guinea/PPD_003CNVU.1/2021-02-12
Kritskiy,
A. A.; Keita,
S.; Magassouba,
N.; Krasnov,
Y. M.; Naryshkina,
A. E.; Safronov,
V. A.; Shevtsova,
A. P.
Submission details
Submission ID
MW962392.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-19 16:26:04 UTC
Date released
2024-11-19 16:35:35 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-11-19 16:26
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Russian Antiplague Research Institute 'Microbe', Microbiology
Alignment states and QC metrics
Completeness
81.10%
Length
18871
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
466
Total unknown nucs
3495
Sample details
Collection country
Guinea
Collection date
2021-02-12
Isolate name
E2
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
MW962392.1
NCBI release date
2021-04-21
NCBI update date
2021-04-21
Nucleotide mutations
Substitutions
C
127
T
C
149
T
A
155
C
A
182
G
A
187
G
C
230
T
T
236
C
A
257
G
C
261
T
G
263
A
A
295
C
C
356
T
G
360
A
T
369
C
T
377
C
T
378
C
G
381
A
T
385
C
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Deletions
None
Insertions
None
Amino acid mutations
Substitutions
GP
GP:
A
82
V
GP:
T
262
A
GP:
V
310
A
GP:
A
315
P
GP:
G
331
E
GP:
T
336
N
GP:
E
359
K
GP:
S
377
P
GP:
L
378
P
GP:
P
382
T
GP:
E
405
G
GP:
T
411
A
GP:
S
422
P
GP:
P
430
L
GP:
T
441
A
GP:
F
443
S
GP:
P
446
L
GP:
H
455
Y
GP:
A
503
V
GP:
I
544
T
L
L:
V
79
I
L:
E
130
D
L:
F
150
L
L:
M
197
L
L:
A
215
T
L:
I
259
V
L:
M
337
I
L:
Q
346
H
L:
D
692
N
L:
S
1383
N
L:
R
1405
Q
L:
V
1573
A
L:
Y
1594
H
L:
Q
1607
H
L:
S
1615
N
L:
S
1645
N
L:
Y
1654
D
L:
A
1656
T
Show more
NP
NP:
I
8
V
NP:
A
11
T
NP:
R
111
C
NP:
K
128
R
NP:
S
465
G
NP:
N
478
S
NP:
I
517
T
NP:
R
525
T
NP:
I
527
T
NP:
P
531
T
NP:
H
534
R
NP:
T
631
I
NP:
Q
637
R
NP:
S
644
P
NP:
E
708
D
NP:
K
728
R
VP35
VP35:
A
12
V
VP35:
S
41
N
VP35:
T
68
M
VP35:
N
204
D
VP40
VP40:
V
20
A
VP40:
I
324
V
sGP
sGP:
A
82
V
sGP:
T
262
A
sGP:
E
314
D
sGP:
G
331
R
sGP:
L
336
M
ssGP
ssGP:
A
82
V
ssGP:
T
262
A
Deletions
None
Insertions
None
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