This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the
example data
repository. This instance should not be used for analysis.
X
Pathoplexus
Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Ebola Zaire
West Nile Virus
Browse
Submit
SeqSets
News
About
Docs
Login
Loculus
Browse
Submit
SeqSets
News
About
Docs
Login
API docs
Governance
Contact
Status
PPD_0039E5P.1
Download
Download FASTA
Download metadata TSV
Display Name: Pakistan/PPD_0039E5P.1/2024-01-01
Umair,
M.; Hakim,
R.; Jamal,
Z.; Salman,
M.
Submission details
Submission ID
PQ523730.1.L/PQ523723.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-19 16:17:00 UTC
Date released
2024-11-19 16:30:17 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-11-19 16:17
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
National Institute of Health, Department of Virology
Alignment states and QC metrics L
Completeness L
98.32%
Length L
11906
Total ambiguous nucs L
0
Total deleted nucs L
0
Total frame shifts L
0
Total inserted nucs L
1
Total SNPs L
1565
Total unknown nucs L
0
Alignment states and QC metrics S
Completeness S
97.49%
Length S
1629
Total ambiguous nucs S
0
Total deleted nucs S
5
Total frame shifts S
0
Total inserted nucs S
4
Total SNPs S
209
Total unknown nucs S
0
Sample details
Collection subdivision level 1
Sindh
Collection country
Pakistan
Collection date
2024-01-01
Isolate name
CCHF/NIHPAK-1/2024
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession L
PQ523730.1
INSDC accession S
PQ523723.1
NCBI release date
2024-11-12
Nucleotide mutations
Substitutions
L
L:
G
23
T
L:
A
35
G
L:
G
43
C
L:
T
49
C
L:
C
63
G
L:
C
64
T
L:
T
65
C
L:
T
66
C
L:
G
69
A
L:
G
71
T
L:
G
88
A
L:
G
93
A
L:
A
109
G
L:
A
124
G
L:
T
131
A
L:
C
148
T
L:
T
151
C
L:
T
154
C
Show more
S
S:
T
49
C
S:
A
50
G
S:
G
54
A
S:
G
67
A
S:
A
78
C
S:
T
79
C
S:
C
82
T
S:
G
99
A
S:
T
106
C
S:
A
109
G
S:
A
118
G
S:
A
148
G
S:
C
166
T
S:
G
169
A
S:
T
172
C
S:
C
178
A
S:
T
182
C
S:
G
190
A
Show more
Deletions
S:1541-1543, S:1617, S:1628
Insertions
ins_S:1529:C, ins_S:1577:A, ins_S:1532:CA, ins_L:58:T
Amino acid mutations
Substitutions
NP
NP:
N
8
T
NP:
R
15
K
NP:
V
83
A
NP:
D
116
E
NP:
T
124
S
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
301
G
NP:
A
307
V
NP:
E
322
D
NP:
Q
405
L
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
N
52
H
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
S
498
G
Show more
Deletions
None
Insertions
None
Load sequences