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Status
PPD_0039E3T.1
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Download FASTA
Download metadata TSV
Display Name: Pakistan/PPD_0039E3T.1/2024-07-12
Umair,
M.; Hakim,
R.; Jamal,
Z.; Salman,
M.
Submission details
Submission ID
PQ523728.1.L/PQ523721.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-19 16:17:00 UTC
Date released
2024-11-19 16:30:17 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-11-19 16:17
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
National Institute of Health, Department of Virology
Alignment states and QC metrics L
Completeness L
99.88%
Length L
12140
Total ambiguous nucs L
0
Total deleted nucs L
7
Total frame shifts L
0
Total inserted nucs L
54
Total SNPs L
1613
Total unknown nucs L
0
Alignment states and QC metrics S
Completeness S
98.92%
Length S
1655
Total ambiguous nucs S
0
Total deleted nucs S
1
Total frame shifts S
0
Total inserted nucs S
2
Total SNPs S
209
Total unknown nucs S
0
Sample details
Collection subdivision level 1
Punjab
Collection country
Pakistan
Collection date
2024-07-12
Isolate name
CCHF/NIHPAK-37/2024
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession L
PQ523728.1
INSDC accession S
PQ523721.1
NCBI release date
2024-11-12
Nucleotide mutations
Substitutions
L
L:
G
23
T
L:
A
35
G
L:
G
43
T
L:
T
49
C
L:
C
63
G
L:
C
64
T
L:
T
65
C
L:
T
66
C
L:
T
68
C
L:
G
69
A
L:
G
71
C
L:
C
85
T
L:
G
88
A
L:
G
93
A
L:
A
109
G
L:
C
117
A
L:
A
124
G
L:
T
131
A
Show more
S
S:
T
48
C
S:
G
54
A
S:
A
61
G
S:
C
64
T
S:
G
67
A
S:
G
99
A
S:
A
118
G
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
G
169
A
S:
C
178
A
S:
T
182
C
S:
C
217
T
S:
G
229
A
S:
C
235
T
S:
T
250
A
S:
G
262
A
Show more
Deletions
L:11920-11924, L:11981, L:11982, S:1617
Insertions
ins_S:1581:C, ins_S:1612:C, ins_L:12083:ACTATTC, ins_L:12078:TTACT, ins_L:12098:TCATGTCCGTTTTATT, ins_L:58:T, ins_L:11917:CATTATC, ins_L:11977:A, ins_L:12108:TGTGGGGGGAAC, ins_L:11973:A, ins_L:12053:CTAC
Amino acid mutations
Substitutions
NP
NP:
R
15
K
NP:
D
116
E
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
V
RdRp:
K
275
R
Show more
Deletions
None
Insertions
None
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